View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_high_20 (Length: 365)
Name: NF18664_high_20
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 44837493 - 44837813
Alignment:
| Q |
19 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
118 |
Q |
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| T |
44837493 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
44837592 |
T |
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| Q |
119 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaagaaacactttcacaaaatcacaa |
218 |
Q |
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| T |
44837593 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaacaaacactt--------tcacaa |
44837684 |
T |
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| Q |
219 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcaatctattggggcca |
318 |
Q |
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| T |
44837685 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcaatctattggggcca |
44837784 |
T |
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| Q |
319 |
aaatggcaacgagggaaccttatccgaag |
347 |
Q |
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| T |
44837785 |
aaatggcaacgagggaaccttatccgaag |
44837813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 44848775 - 44848880
Alignment:
| Q |
213 |
tcacaaagatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgcaacttcccatgctggtggcatagcaatctattg |
312 |
Q |
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| T |
44848775 |
tcacaaagatggcaaagaattctcatacctt---gtcactttttctt---ttcctcactcttgttagaacctcctatgctggtggcatagccatctactg |
44848868 |
T |
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| Q |
313 |
gggccaaaatgg |
324 |
Q |
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| T |
44848869 |
gggccaaaatgg |
44848880 |
T |
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