View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_high_21 (Length: 356)
Name: NF18664_high_21
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 174 - 338
Target Start/End: Complemental strand, 2503613 - 2503450
Alignment:
| Q |
174 |
gtatatactttaattattaatttgcagtaatcaacactatcataccagagaagtgtgtaaagaaattaagccaattaagctaataacaaacactgagaat |
273 |
Q |
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| T |
2503613 |
gtatatactttaattattaatttgcagtaatcaacgctatcataccagagaagtgtgtaaagcaattaagccaactaagctaataacaaacac-gagaat |
2503515 |
T |
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| Q |
274 |
gaccatgatatcccaaattgcgatgggaaaacttaagttttcaagatattagtctgttctctctc |
338 |
Q |
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| T |
2503514 |
gatcatgatatcccaacctgtcattggaaaactgaagttttcaagttatgagtctgttctctctc |
2503450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 2642984 - 2643069
Alignment:
| Q |
170 |
agtcgtatatactttaattattaatttgcagtaatcaacactatcataccagagaagtgtgtaaagaaattaagccaattaagcta |
255 |
Q |
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| T |
2642984 |
agtcgtatatactttaattattaatttgcagtaatcaacactatcataccagagaagtgtgtaaagaaattaagtcaattaagcta |
2643069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 337
Target Start/End: Original strand, 2643327 - 2643410
Alignment:
| Q |
254 |
taataacaaacactgagaatgaccatgatatcccaaattgcgatgggaaaacttaagttttcaagatattagtctgttctctct |
337 |
Q |
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| T |
2643327 |
taataacaaacactgagaatgaccatgctatcccaaactgtcatgggaaaactgaagttttcaagatatgagtctgttctctct |
2643410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 2632061 - 2631965
Alignment:
| Q |
184 |
taattattaatttgcagtaatcaacactatcataccagagaagtgtgtaaagaaattaagccaattaagctaataacaaacactgagaatgaccatg |
280 |
Q |
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| T |
2632061 |
taattattaatttgcagtaatcaacactatcatactagactagtgtataaaaaaataaagtctattaagataatcacaaacacagagaatgaccatg |
2631965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 7332644 - 7332730
Alignment:
| Q |
251 |
agctaataacaaacactgagaatgaccatgatatcccaaattgcgatgggaaaacttaagttttcaagatattagtctgttctctctc |
338 |
Q |
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| T |
7332644 |
agctgataacaaacactgagaatgaccatgctatcccaaactatcatgggaaagctgaag-tttcaagaaatgagtctgttctctctc |
7332730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 7437799 - 7437882
Alignment:
| Q |
182 |
tttaattattaatttgcagtaatcaacactatcataccagagaagtgtgtaaagaaattaagccaattaagctaataacaaacac |
266 |
Q |
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| T |
7437799 |
tttaataattattttgcactaatca-cactatcataccagactagtgtataaagcaattaagttatttacgctaataacaaacac |
7437882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 7332589 - 7332634
Alignment:
| Q |
187 |
ttattaatttgcagtaatcaacactatcataccagagaagtgtgta |
232 |
Q |
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| T |
7332589 |
ttattaatttgcaataatcactgctatcataccagagaagtgtgta |
7332634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 7439023 - 7439067
Alignment:
| Q |
231 |
taaagaaattaagccaattaagctaataacaaacactgagaatga |
275 |
Q |
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| T |
7439023 |
taaagcaattatgtcaattaagctaataacaaacacagagaatga |
7439067 |
T |
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