View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18664_high_29 (Length: 282)

Name: NF18664_high_29
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18664_high_29
NF18664_high_29
[»] chr1 (2 HSPs)
chr1 (17-271)||(5927766-5928021)
chr1 (139-271)||(4342269-4342403)
[»] chr7 (1 HSPs)
chr7 (17-130)||(33937760-33937873)
[»] chr5 (2 HSPs)
chr5 (139-236)||(22811255-22811352)
chr5 (17-130)||(22811628-22811742)
[»] chr8 (1 HSPs)
chr8 (139-229)||(19644391-19644481)
[»] chr4 (5 HSPs)
chr4 (139-236)||(22694927-22695023)
chr4 (139-183)||(22715599-22715643)
chr4 (139-183)||(22989582-22989626)
chr4 (139-183)||(28949859-28949903)
chr4 (139-183)||(46954977-46955021)
[»] chr3 (1 HSPs)
chr3 (139-233)||(7009343-7009437)
[»] chr2 (1 HSPs)
chr2 (17-130)||(29842885-29842998)
[»] scaffold0009 (1 HSPs)
scaffold0009 (139-183)||(201485-201529)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 5927766 - 5928021
Alignment:
Q  17 ccttccatcagaatctcttttttgcccttgatttgtactgcttttcatctacctcataactttccatctaatcagaattcataactcatttcaaaatttg 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |    
T  5927766 ccttccatcaaaatctcttttttgcccttgatttgtactgcttttcacctccctcataactttccatctaatcagaattcataactcgtttcaaaattcg 5927865  T
Q  117 aatgcaaatatgatagttttcataattcagttttgataacattgcatttgatgtgtttgataaaatgcctaattaaaaaacaatttatttcttttgtttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5927866 aatgcaaatatgatagttttcataattcagttttgataacattgcatttgatgtgtttgataaaatgcctaataaaaaaacaatttatttcttttgtttt 5927965  T
Q  217 ccttgaccttagttatgatt-tgttttttccttcttcttgaaatattaatgatatt 271  Q
    |||||||||||||||||||| | | ||||  |||||||||||||||||||||||||    
T  5927966 ccttgaccttagttatgattgtttattttttttcttcttgaaatattaatgatatt 5928021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 4342269 - 4342403
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatgcctaattaaaaaacaatttatttcttttgttttccttgaccttagttatgatttg 238  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||      
T  4342269 taattcaattttgataacattgcatttgatgtgtttgataaaatgcctgaataaaaaacaatttatttcttttgttttccttaaccttagttatgattgt 4342368  T
Q  239 ttttttccttctt--cttgaaatattaatgatatt 271  Q
    ||||||  || ||  | ||||||||||||||||||    
T  4342369 ttttttttttttttgcctgaaatattaatgatatt 4342403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 33937873 - 33937760
Alignment:
Q  17 ccttccatcagaatctcttttttgcccttgatttgtactgcttttcatctacctcataactttccatctaatcagaattcataactcatttcaaaatttg 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||||||||| ||||||||||||    
T  33937873 ccttccatcaaaatctcttttttgcccttgatttgtactgcttttcacctccctcgtcactttccatctaatcagaattcataactcctttcaaaatttg 33937774  T
Q  117 aatgcaaatatgat 130  Q
    ||||||||||||||    
T  33937773 aatgcaaatatgat 33937760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 22811352 - 22811255
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatgcctaattaaaaaacaatttatttcttttgttttccttgaccttagttatgatt 236  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22811352 taattcaattttgataacattgcatttgatgtgtttgataaaatgcctaaataaaaaacaatttatttcttttgttttccttgaccttagttatgatt 22811255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 22811742 - 22811628
Alignment:
Q  17 ccttccatcagaatctctttttt-gcccttgatttgtactgcttttcatctacctcataactttccatctaatcagaattcataactcatttcaaaattt 115  Q
    |||||||||| |||||||||||| ||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||    
T  22811742 ccttccatcaaaatctctttttttgcccttgatttgtgctgcttttcacatccctcataactttccatctaatcagaattcataactcctttcaaaattt 22811643  T
Q  116 gaatgcaaatatgat 130  Q
    |||||||||||||||    
T  22811642 gaatgcaaatatgat 22811628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 19644391 - 19644481
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatgcctaattaaaaaacaatttatttcttttgttttccttgaccttagt 229  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19644391 taattcaattttgataacattgcatttgatgtgtttgataaaatgcctaaataaaaaacaatttatttcttttgttttccttgaccttagt 19644481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 22694927 - 22695023
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatgcctaattaaaaaacaatttatttcttttgttttccttgaccttagttatgatt 236  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  22694927 taattcaattttgataacattgcatttgatgtgtttgataaaatgcctaaat-aaaaacaatttatttcttttgttttccttgaccttagttatgatt 22695023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 22715643 - 22715599
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatg 183  Q
    |||||||||| |||||||| |||||||||||||||||||||||||    
T  22715643 taattcagttatgataacaatgcatttgatgtgtttgataaaatg 22715599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 22989582 - 22989626
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatg 183  Q
    |||||||||| |||||||| |||||||||||||||||||||||||    
T  22989582 taattcagttatgataacaatgcatttgatgtgtttgataaaatg 22989626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 28949903 - 28949859
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatg 183  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||    
T  28949903 taattcagttatgataacaatgcatttgatgtgttagataaaatg 28949859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 46954977 - 46955021
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatg 183  Q
    |||||||||| | |||||| |||||||||||||||||||||||||    
T  46954977 taattcagttatcataacaatgcatttgatgtgtttgataaaatg 46955021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 7009343 - 7009437
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatgcctaattaaaaaacaatttatttcttttgttttccttgaccttagttatg 233  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  7009343 taattcaattttgataacattgcatctgatgtgtttgataaaatgcctaaataaaaaacaatctatttcttttgttttccttgaccttagttatg 7009437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 29842885 - 29842998
Alignment:
Q  17 ccttccatcagaatctcttttttgcccttgatttgtactgcttttcatctacctcataactttccatctaatcagaattcataactcatttcaaaatttg 116  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||||||| || |||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  29842885 ccttccatcaaaatcttttttttgcccttgatttatactacttttcacctccctcatcactttccatctaatcaaaattcataactcctttcaaaatttg 29842984  T
Q  117 aatgcaaatatgat 130  Q
    ||||||||||||||    
T  29842985 aatgcaaatatgat 29842998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 201529 - 201485
Alignment:
Q  139 taattcagttttgataacattgcatttgatgtgtttgataaaatg 183  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||    
T  201529 taattcagttatgataacaatgcatttgatgtgttagataaaatg 201485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University