View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_high_30 (Length: 280)
Name: NF18664_high_30
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 49952071 - 49952328
Alignment:
| Q |
1 |
tgtcccttccatatcttgatgatgatccttcccaccactacttcctggaataaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcacca |
100 |
Q |
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| T |
49952071 |
tgtcccttccatatcttgatgatgatccttcccaccactacttcctggaataaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcacca |
49952170 |
T |
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| Q |
101 |
ccacctgcacctgcaacatagttcatgttgtgatattgctggtggtgactgctactcatcacgtgacccacatgatattcattcattggatgctgaggaa |
200 |
Q |
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| T |
49952171 |
ccacctgcacctgcaacatagttcatgttgtgatattgctggtggtgactgctactcatcacgtgacccacatgatattcattcattggatgctgaggaa |
49952270 |
T |
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| Q |
201 |
tcaaatgtgttgggaaagacactgggcgtgtaggtgaagagtacagatatggttgaga |
258 |
Q |
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| T |
49952271 |
tcaaatgtgttgggaaagacactgggcgtgtaggtgaagagtacagatatggttgaga |
49952328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 49978932 - 49978876
Alignment:
| Q |
52 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
108 |
Q |
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| T |
49978932 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
49978876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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