View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_high_37 (Length: 250)
Name: NF18664_high_37
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_high_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 4213704 - 4213461
Alignment:
| Q |
13 |
aaaatagaacattctagtggacctaacaagagacaagccgatattagctaagccatccgccacttggttggcttcacacaaatatgagaccacaaaacaa |
112 |
Q |
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| T |
4213704 |
aaaatagaacattctagtggacctaacaagagacaagccgatattagctaagccatccgccacttggttggcttcacacaaatatgagaccacaaaacaa |
4213605 |
T |
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| Q |
113 |
ttagcaatttagcataatacacgtatgaatattatatatat------actacatgaatataggaatcccttatgtgattcaatgaccacattatcaaact |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4213604 |
ttagcaatttagcataatacacgtatgaatattatatatatatatacactacatgaatataggaatcccttatgtgattcaatgaccacattatcaaact |
4213505 |
T |
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| Q |
207 |
ttgccacnnnnnnnccaaagatcccaatgcatcagcaaaccaca |
250 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
4213504 |
ttgccacaaaaaaaacaaagatcccaatgcatcagcaaaccaca |
4213461 |
T |
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