View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_high_4 (Length: 666)
Name: NF18664_high_4
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 585; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 35909233 - 35908585
Alignment:
| Q |
1 |
tgtggaggagcagagataacattgctctaagcatgactggtggaaacattgatgttgcatgccatgaaaactcgaaatgaagctcaagaatctataaaat |
100 |
Q |
| |
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|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35909233 |
tgtgaaggatcagtgataacattgctctaagcatgactggtggaaacattgatgttgcatgccatgaaaactcgatatgaagctcaagaatctataaaat |
35909134 |
T |
|
| Q |
101 |
ctaagaaaacgatgaatcaacaagaaattgttgtgaataaaaagcaattatgaaaaattgcaacgaagatgtaaagaaaatcttatgattctgcaagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35909133 |
ctaagaaaacgatgaatcaacaagaaattgttgtgaataaaaagcaattatgaaaaattgcaacgaagatgtaaagaaaatcttatgattctgcaagaac |
35909034 |
T |
|
| Q |
201 |
cttcaagtatgcggaagcagtctcgaaaggctcgtgataccatattatgatatcaaagatcaaaggaaattgagagagaaaactcatgtattgtattgat |
300 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35909033 |
cttcaagtatgcggaagcagtctcgaaaagctcatgataccatattatgatatcaaagatcaaaggaaattgagagagaaaacgcatgtattgtattgat |
35908934 |
T |
|
| Q |
301 |
gatctaaaaatgaagtttacttggatagcaagcaaatgtttgcaactaactaaattaagagtaaattgtgatctatgaactagatgaggagtcattatga |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35908933 |
gatctaaaaatgaagtttacttggataacaagcaaatgtttgcaactaactaaattaagagtaaattgtgatctatgaactagatgagttgtcattatga |
35908834 |
T |
|
| Q |
401 |
cttgctatagccgatggaaggtgtataggtgatgtatcaacattatcctctaatagaaatcgatgttgataatgagccacacaattttatgtgaaatcca |
500 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
35908833 |
cttgctatagccgatggaaggtgtgtaggtgatgtatcaacattatcctctaatagaaatcgatgttggtaatgagccatacaattttatgtgaaatcca |
35908734 |
T |
|
| Q |
501 |
tttttaaagtgtatgatcaacattgattttatctaataaaaaagtttgtgtttgagagaatgttgtaaaaagagtattataagactcatatttgcacaac |
600 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35908733 |
tttttaaagtgtatgatcaacattgattttatataataaaaaagtttgtgtttgagagaatgttgtaaaaagagtattataagactcatatttgcacaat |
35908634 |
T |
|
| Q |
601 |
atttatctctttgcctttctctccttgcggattgtaaatccaagaaaat |
649 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35908633 |
atttatctctttgtctttctctccttgcggattgtaaatccaagaaaat |
35908585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 35910711 - 35910649
Alignment:
| Q |
393 |
cattatgacttgctatagccgatggaaggtgtataggtgatgtatcaacattatcctctaata |
455 |
Q |
| |
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|||||||| |||||||||||| |||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
35910711 |
cattatgatttgctatagccggtggaaggtgtgtagaggatgtatcaactttatcctctaata |
35910649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 35910879 - 35910806
Alignment:
| Q |
243 |
tattatgatatcaaagatcaaaggaaattgagagagaaaactcatgtattgtattgatgatctaaaaatgaagtt |
317 |
Q |
| |
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||||||| |||||| |||||||| |||||||||||||||||||| ||| | ||||||||| ||||||||||||| |
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| T |
35910879 |
tattatgctatcaa-gatcaaagagaattgagagagaaaactcatttatggaattgatgatttaaaaatgaagtt |
35910806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 545
Target Start/End: Complemental strand, 27183459 - 27183398
Alignment:
| Q |
484 |
attttatgtgaaatccatttttaaagtgtatgatcaacattgattttatctaataaaaaagt |
545 |
Q |
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||||||||| || |||||||| ||||||||||||| |||||||||| | | ||||||||||| |
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| T |
27183459 |
attttatgttaattccattttcaaagtgtatgatccacattgatttaacccaataaaaaagt |
27183398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 545
Target Start/End: Complemental strand, 27833001 - 27832940
Alignment:
| Q |
484 |
attttatgtgaaatccatttttaaagtgtatgatcaacattgattttatctaataaaaaagt |
545 |
Q |
| |
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||||||||| || |||||||| ||||||||||||| |||||||||| | | ||||||||||| |
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| T |
27833001 |
attttatgttaattccattttcaaagtgtatgatccacattgatttaacccaataaaaaagt |
27832940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 543
Target Start/End: Complemental strand, 4394469 - 4394412
Alignment:
| Q |
486 |
tttatgtgaaatccatttttaaagtgtatgatcaacattgattttatctaataaaaaa |
543 |
Q |
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||||| |||||| ||||||||||||||| |||| ||||| ||||||| |||||||||| |
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| T |
4394469 |
tttatttgaaattcatttttaaagtgtaagatctacattaattttatttaataaaaaa |
4394412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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