View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_1 (Length: 731)
Name: NF18664_low_1
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 10 - 636
Target Start/End: Complemental strand, 21149309 - 21148688
Alignment:
| Q |
10 |
aagaatatcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21149309 |
aagattatcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgt |
21149210 |
T |
|
| Q |
110 |
atcatcttaaccggattctttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaaatttgttggattgtgtcgatgatgtg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
21149209 |
atcatcttaaccggattctttgggaataagttaaggcttctaatgagcttttctgctcgttgatttggtgaaaaacttgttggattatgtcgatgatgtg |
21149110 |
T |
|
| Q |
210 |
tgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttgctgtcttgtaagtggaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21149109 |
tgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttgctgtcttttaag----- |
21149015 |
T |
|
| Q |
310 |
aggaaagagtgatgcaatggcaaagtttgtaaagcattggctatgcaaagtaacccatagagagtattgaaaggtttaaggaataatataatttggtttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21149014 |
aggaaagagtgatgcaatggcaaagtttgtaaagcattggctatgcaaagtaacccataggaagtattgaaaggtttaaggaataatataatttggtttt |
21148915 |
T |
|
| Q |
410 |
ataattgtaaactttcaataatctagctagaagcacttctacagctgcattaatgcgtatgtccttctcaataatctattttaaattcctaagtaaatcc |
509 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21148914 |
ataattgtaaactttcaataatctagctagaatcacttctacagctgcattaatgtgtatgtccttctcaataatctattttaaattcccaagtaaatcc |
21148815 |
T |
|
| Q |
510 |
ttctcatgatacctagaagccaattcagctccttctcacatatatcacttatttatgtaaacttatattccctttaataacctccttatgagtctagcaa |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21148814 |
ttctcatgatacctagaagccaattcagctccttctcacgtatatcacttatttatgtaaacttatattccctttaataacctccttatgagtctagcaa |
21148715 |
T |
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| Q |
610 |
tcaatgattaaatcttcaaacccctca |
636 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
21148714 |
tcagtgattaaatcttcaaacccctca |
21148688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 21143491 - 21143210
Alignment:
| Q |
17 |
tcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacaga-atgaccatgtatcatc |
115 |
Q |
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||||||||| | |||| ||||| || ||||||||||||||| ||||| |||| |||||||||||||||| ||||| | || || |||||| || || |
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| T |
21143491 |
tcaatagaaggaccattagaatcactaaaaaacgagaacttcttctcgacgagttttccagggacaaaatgatcaat-agagtgatcaccatgaattata |
21143393 |
T |
|
| Q |
116 |
ttaaccggattctttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaaatttgttg--gattg-----tgtcgatgatgt |
208 |
Q |
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||||| |||| |||||| |||||||||| |||| | || || ||||| |||||||| ||||||||||| |||| || ||| | | |||||||| |
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| T |
21143392 |
ttaactggatcctttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaattttggtgttgatgaaaaactat-gatgatgt |
21143294 |
T |
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| Q |
209 |
gtgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttg |
292 |
Q |
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|||||||| |||||||| || | |||||||| |||| |||||||| ||||| ||| || ||||||| ||||||||||||||| |
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| T |
21143293 |
gtgatgcgagaagttgcgtatgaagaagaaaacaaaacgaacaataacaaaagagatagagaggttttagagaatcccatgttg |
21143210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 21123568 - 21123402
Alignment:
| Q |
17 |
tcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgtatcatct |
116 |
Q |
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||||||||| | ||| |||||| ||| |||||||||||||| ||||| ||||||||||| || | ||||| |||||| | || |||||| || | | |
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| T |
21123568 |
tcaatagaaggaccaccagaatcaccgaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaagagaatgatcaccatgaattacat |
21123469 |
T |
|
| Q |
117 |
taaccggattctttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaa |
183 |
Q |
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| T |
21123468 |
taactgattgctttgggaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaa |
21123402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 21113612 - 21113542
Alignment:
| Q |
205 |
atgtgtgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggttt |
275 |
Q |
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||||||| |||| ||||||||||| |||||||||||||||||||||| | ||||| ||||| ||||||| |
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| T |
21113612 |
atgtgtggtgcgagaagttgcatatgaggaagaaaataaaatgaacaacaacaaaagagacatagaggttt |
21113542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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