View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_10 (Length: 555)
Name: NF18664_low_10
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 3 - 467
Target Start/End: Complemental strand, 4213368 - 4212905
Alignment:
| Q |
3 |
caaagtcaacctctttcgctgtataccataaaaagaaacaaacaggttagtaataattaacaattgaaaccgcgaaaccataaaaagagcaaaaagctac |
102 |
Q |
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| T |
4213368 |
caaagtcaacctctttcgctgtataccataaaaagaaacaaacaggttagtaataattaacaattgaaaccgcgaaaccataaaaagaacaaaaagctac |
4213269 |
T |
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| Q |
103 |
aaaaaggaacagaaattcatacctcttcaaaaggaggtgttgagagtaacaatacactaatacccaagcacgcaattgccgtaagaataccaccaatgtt |
202 |
Q |
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| T |
4213268 |
aaaaaggaacagaaattcatacctcttcaaaaggaggtgttgagagtaaccaaacactaattcccaagcacgcaattgcggtaagaataccaccaatgtt |
4213169 |
T |
|
| Q |
203 |
gagaaggacagggaggtaagctccaacagcagcagcggccacagcaaaacacaaggtcaaataaacctacaatcattaattcaacacaattgtaaaacta |
302 |
Q |
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| T |
4213168 |
gagaaggacatggaggtaagctccaacagcagcagcggccacagcaaaacacaaggtcaaataaacctacaatcattaattcaacacaattgtaaaacta |
4213069 |
T |
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| Q |
303 |
gttcttgtaaaattgtaatcaatgaattattccaaaaaatacaatgatttcattaacctaattcttctaaatctccgtaataatcaaaactagcttaatc |
402 |
Q |
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| T |
4213068 |
gttctcgt-aaattgtaatcaatgaattattccaaaaaattcaatgatttcattaacctaattcttctaaatctccgtaataatcaaaactagcttaatc |
4212970 |
T |
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| Q |
403 |
aagaaaagaattgttccggtcataaatttaacttggttctcaacaagaaatgatacatataagat |
467 |
Q |
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| T |
4212969 |
aagaaaagaattgttccggtcataaatttaacttggttctcaacaagaaatgatacatataagat |
4212905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 125 - 270
Target Start/End: Original strand, 31161332 - 31161477
Alignment:
| Q |
125 |
ctcttcaaaaggaggtgttgagagtaacaatacactaatacccaagcacgcaattgccgtaagaataccaccaatgttgagaaggacagggaggtaagct |
224 |
Q |
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||||||| |||||||||||||||||||| | |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31161332 |
ctcttcagaaggaggtgttgagagtaaccaaacactaattcccaagcacgcaattgtggtaagaataccaccaatgttgagaaggacatggaggtaagct |
31161431 |
T |
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| Q |
225 |
ccaacagcagcagcggccacagcaaaacacaaggtcaaataaacct |
270 |
Q |
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| T |
31161432 |
ccaatagcagcagcgactacaacaaaacacaaggtcaaataaacct |
31161477 |
T |
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