View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_11 (Length: 539)
Name: NF18664_low_11
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_11 |
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| [»] scaffold0362 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 137 - 524
Target Start/End: Original strand, 2535023 - 2535401
Alignment:
| Q |
137 |
atcacaaaggaggcgtataactcgatcagtcccttcaaactatactaaccaaatataaagaacgtgattctcacgtcctcgttccagagtctcatctatg |
236 |
Q |
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| T |
2535023 |
atcacaaaagagacgtatgactcaatcggttccttcaaactata-tgaccaaatataaagaacatgaa-ctcacgtcctcgttccagagtctcatc---- |
2535116 |
T |
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| Q |
237 |
tgaaattgaaggagggtacaataaccaaccatctgctttattttgagctttgtcgcatcaaccaaataattgtaaaggaag-gcaagatccgcaacaccc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2535117 |
----attgaaggagggtacaataaccaaccatctgctttattttgaactttgtcgcatcaaccaaataattgtaaaggaagtgcaagatccgcaacaccc |
2535212 |
T |
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| Q |
336 |
tagaaccactagttcactttagagatgtcttgaaagtagtgtaggtacatgaaatctacatagtatgaactcctatcatgtgacgatcttaaacatgctc |
435 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2535213 |
tagaaccactagttcactttaaagatgtcttgaaagtagtgtaggtacatgaaatctacatagtatgaactcctatcatgtgacgatcttaaacatgctc |
2535312 |
T |
|
| Q |
436 |
taatccttttctcaatctcatactgatttgccttgattagataatcatggtaaatttcttgaagccatgagaatgttatatgagcctct |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2535313 |
taatccttttctcaatctcatactgatttgccttgattagataatcatggtaaatttcttgaagccatgagaatgttatatgagcctct |
2535401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 2534890 - 2534998
Alignment:
| Q |
12 |
aagaaagagaataaaaatatttttaagcggaaatgagtaagttaagattttt-taaaaaatgtggtgcaaaaaggttaagactcttttgaaaataatcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2534890 |
aagaaagagaataaaaatatttttaagcggaaatgagtaagttaagatttttagaaaaaatgtggtgc-aaaaggttaagactcttttgaaaataatcaa |
2534988 |
T |
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| Q |
111 |
caaatatcat |
120 |
Q |
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| T |
2534989 |
caaatatcat |
2534998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0362 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0362
Description:
Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 10380 - 10433
Alignment:
| Q |
154 |
taactcgatcagtcccttcaaactatactaaccaaatataaagaacgtgattct |
207 |
Q |
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| T |
10380 |
taactcaatcagtccctttgaactatactgaccaaatatagagaacatgattct |
10433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 21304118 - 21304073
Alignment:
| Q |
154 |
taactcgatcagtcccttcaaactatactaaccaaatataaagaac |
199 |
Q |
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| T |
21304118 |
taactcgatcggtcccttcaaactatgctcaccaaatatagagaac |
21304073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 1133875 - 1133823
Alignment:
| Q |
164 |
agtcccttcaaactatactaaccaaatataaagaacgtgattctcacgtcctc |
216 |
Q |
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| T |
1133875 |
agtcccttcaaactatactaataaaatatagagaatgtggttctcacatcctc |
1133823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 55398924 - 55398876
Alignment:
| Q |
165 |
gtcccttcaaactatactaaccaaatataaagaacgtgattctcacgtc |
213 |
Q |
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| T |
55398924 |
gtccctttaaactgtactgaccaaatataaagaacatggttctcacgtc |
55398876 |
T |
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