View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_13 (Length: 507)
Name: NF18664_low_13
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 3675349 - 3675564
Alignment:
| Q |
16 |
atcaatcacagctgcagttgtaggtcgaaatatattattcccagtgataagttcatgaatttgacgatacacttggcttcctgtgtatatacttgtaaaa |
115 |
Q |
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| T |
3675349 |
atcaatcacagctgcagttgtaggtcgaaatatattattcccagtgataagttcatgaatttgacgatacacttggcttcctgtgtatatacttgtaaaa |
3675448 |
T |
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| Q |
116 |
aatgctaccacaagcaaatacctaagattnnnnnnnttattaattaaagttccatacaaattaaattttgacaaaaacccatcatatcacatttcacgac |
215 |
Q |
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| T |
3675449 |
aatgctaccacaagcaaatacctaagattaaaaaaattattaattaaagttccatacaaattaaattttgacaaaaacccatcatatcacatttcacgac |
3675548 |
T |
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| Q |
216 |
aaaacttcactactgg |
231 |
Q |
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| T |
3675549 |
caaatttcactactgg |
3675564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 284 - 488
Target Start/End: Original strand, 3675616 - 3675816
Alignment:
| Q |
284 |
ttatcgttaaatatgnnnnnnnaaggatatcgttagatatgttgttaagtattacaggcgccaaatatgacaatgaatttcannnnnnnnnctctctaat |
383 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3675616 |
ttatcgttaaatatgtttttttaaggatattgttagatatgttgttaagtattacaggcgccaaatatgacaatgaatttcatttttttt-ctctctaat |
3675714 |
T |
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| Q |
384 |
ttttctattatttcgacnnnnnnnnnnnnntagtagtgataattgttgtgatagttgcattatattgttaatagtcgcaatgttatttctcaaaatcaaa |
483 |
Q |
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| T |
3675715 |
ttttctattatttcaacaaaaaaaaaa---tagtagtgataattgttgtgatagttgcattatattgttaatagttgcaatgttatttcttaaaatcaaa |
3675811 |
T |
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| Q |
484 |
atttt |
488 |
Q |
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||||| |
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| T |
3675812 |
atttt |
3675816 |
T |
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