View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_14 (Length: 471)
Name: NF18664_low_14
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Original strand, 52831852 - 52832300
Alignment:
| Q |
9 |
gacatcatcaagaagtagataaacaaaatacaaaacaaatggaaaagcaccttaagttcatccttgccccaggcatatttttcataagatgtccatgcat |
108 |
Q |
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| T |
52831852 |
gacataatcaagaagtagataaacaaaatacaaaacaaatggaaaagcaccttaagttcatccttgccccaggcatatttttcataagatgtccatgcat |
52831951 |
T |
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| Q |
109 |
gaagcatggcatctttaactttctctcttcgttctaagctaataggatcannnnnnnnnnnnnnnnnnnnnnnatccgcaacagaaacacccttgttgat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52831952 |
gaagcatggcatctttaactttctctcttcgttctaagctaataggatcattctcctcctcctcctcctcctcatccgcaacagaaacacccttgttgat |
52832051 |
T |
|
| Q |
209 |
tttttcatcaatttcaatactttcttctgacccttttatatttccctttatatcttccagctgcaatttcaaataacacaaatcaacccacc--nnnnnn |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52832052 |
tttttcatcaatttcaatactttcttctgacccttttatatttccctttatatcttccagctgcaatttcaaataacacaaatcaacccaccaaaaaaaa |
52832151 |
T |
|
| Q |
307 |
nntgtcaaatttaatgtaaaaaactataatttgtagcagatcttacagttttttgcaagcgggtaacctcttgttttaatctgaaaatatcctgttggtg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52832152 |
aatgtcaaatttaatgtaaaaaactataatttgtagcagatcttacagttttttgcaagcgggtaacctcttgttttaatctgaaaatatcttgttggtg |
52832251 |
T |
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| Q |
407 |
ttctctattgagtaactgacgatcatagacaaaccatgcaagagagatt |
455 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52832252 |
ttctctactgagtaattgacgatcatagacaaaccatgcaagagagatt |
52832300 |
T |
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