View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_15 (Length: 467)
Name: NF18664_low_15
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 32 - 448
Target Start/End: Original strand, 33116105 - 33116523
Alignment:
| Q |
32 |
agatgaacggaggctcagcaatgaaataataattacttacttggtaattgaaatcatagacaacgaaatgcaattgatataaaagtttccatgatcaagc |
131 |
Q |
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| T |
33116105 |
agatgaacggaggctcagcaatgaaataataattacttacttggtaattgaaatcatagacaatgaaatgcaattgatataaaagtttccatgatcaagc |
33116204 |
T |
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| Q |
132 |
aaatggtattaagcactgcattatcaaaactcatatgcaaggaattataacaagaacnnnnnnn-ggttgggcatagatgtcccctattagaaattaacn |
230 |
Q |
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| T |
33116205 |
aaatggtattaagcactgcattatcaaaactcatctgcaaggaattataacaagaacaaaaaaaaggttgggcatagatgtcccctattagaaattaaca |
33116304 |
T |
|
| Q |
231 |
nnnnnn-tgaaagcattaaaaagactaaacagataacccctgggaaaaataaggccaagttctctttatagttgtaatgaggtgagagtgggaagttata |
329 |
Q |
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| T |
33116305 |
aaaaaaatgaaagcattaaaaagactaaacagataacccctgggaaaaataaggtcaagttctctttatagttgtaatgaggtgagagtgggaatttata |
33116404 |
T |
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| Q |
330 |
gttggttgagttttaaaataacttgtattctgatggggacataaaattatcactcttaatacaggggatgaaaaagctaaaaacaagcaaaatatataca |
429 |
Q |
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| T |
33116405 |
gttggttgagttttaaaataacttgtattctgatggggacataaaattatcactcataatacaggggatgaaaaagctaaaaacaagcagaatatatgca |
33116504 |
T |
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| Q |
430 |
tacgaatcaatgatacagg |
448 |
Q |
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| T |
33116505 |
tacgaatcaatgatacagg |
33116523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 33167804 - 33167927
Alignment:
| Q |
63 |
attacttacttggtaattgaaatcatagacaacgaaatgcaattgatataaaagtttccatgatcaagcaaatggtattaagcactgcatt---atcaaa |
159 |
Q |
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|||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||| | |
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| T |
33167804 |
attaattacttgatagttgaaatcatagacaatgaaatgcaattgatataaaagtttcca----caaacaaatggtattaagcactacattagcatcata |
33167899 |
T |
|
| Q |
160 |
actcatatgcaaggaattataacaagaa |
187 |
Q |
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|||||| | |||||| || ||||||||| |
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| T |
33167900 |
actcatctacaaggacttgtaacaagaa |
33167927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 33167984 - 33168024
Alignment:
| Q |
237 |
tgaaagcattaaaaagactaaacagataacccctgggaaaa |
277 |
Q |
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| T |
33167984 |
tgaaaccattaaaaagactaaacagacaacccttgggaaaa |
33168024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 44826201 - 44826147
Alignment:
| Q |
128 |
aagcaaatggtattaagcactgcattatcaaaactcatatgcaaggaattataac |
182 |
Q |
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| T |
44826201 |
aagcaaatggtattaagcactgcattatcataactaatctgtaaggacttataac |
44826147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 52690029 - 52689957
Alignment:
| Q |
237 |
tgaaagcattaaaaagactaaacagataacccctgggaaaa------ataaggccaagttctctttatagttg |
303 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||| | || ||||||||||||||||||||| |
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| T |
52690029 |
tgaaatcattaaaaagactaaacagacaacccttgggaaaatcaagcaaaaagccaagttctctttatagttg |
52689957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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