View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18664_low_16 (Length: 460)
Name: NF18664_low_16
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 20213731 - 20214164
Alignment:
| Q |
10 |
gcagagattggagatagtacctcatgttgttggattgaatcgaagatgagaaaaagaggtaggtaccgtaaaaccctaattccttctttggttagtgaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20213731 |
gcagagattggagatagtacctcatgttgttggattgaatcgaagatgagaaaaagaggtaggtaccgtaaaaccctaattccttctttggttagtgaca |
20213830 |
T |
|
| Q |
110 |
gnnnnnnnccccaaaagtgatacttattcagctgttgcgtatttatatgccacgttgattggatgacacttcaagtagagagagatctagtactctcctg |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20213831 |
gaaaaaa-ccccaaaagtgatacttattcagctgttgcgtatttatatgccacgttgattggatgacacttcaagtagagagagatctagtactctcctg |
20213929 |
T |
|
| Q |
210 |
caagaatagaatatgctcaattcatcatggactggactttatggcccgactattactttgagggttgttgatatttgcacctg-nnnnnnnnnaatgtac |
308 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20213930 |
caagaatagaatatgctcaattcatcacggactggactttatggcccgactattactttgagggttgttgatatttgcacctgtgttttttttaatgtac |
20214029 |
T |
|
| Q |
309 |
ccctttatgttttatcacatggaagacacatgtgatgccatcttccctctttattagagatgtccattttcatccgaaagtagggaccatgaaggactac |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20214030 |
ccctttatgttttatcacatggaagacacatgtgatgccatcttccctctttattagagatgtccattttcatccgaaagtagggaccatgaatgactac |
20214129 |
T |
|
| Q |
409 |
ccccattcaaggcctattggtttgcggggaatgct |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
20214130 |
ccccattcaaggcctattggtttgcggggaatgct |
20214164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 304 - 443
Target Start/End: Original strand, 20233626 - 20233765
Alignment:
| Q |
304 |
tgtacccctttatgttttatcacatggaagacacatgtgatgccatcttccctctttattagagatgtccattttcatccgaaagtagggaccatgaagg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20233626 |
tgtacccctttatgttttatcacatggaagacacatgtgatgccatcttccctctttattagagatgtccattttcatccgaaagtagggaccatgaatg |
20233725 |
T |
|
| Q |
404 |
actacccccattcaaggcctattggtttgcggggaatgct |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20233726 |
actacccccattcaaggcctattggtttgcggggaatgct |
20233765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 44298243 - 44298676
Alignment:
| Q |
10 |
gcagagattggagatagtacctcatgttgttggattgaatcgaagatgagaaaaagaggtaggtaccgtaaaaccctaattccttctttggttagtgaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44298243 |
gcagagattggagatagtacctcatgttgttggattgaatcgaagatgagaaaaagaggtaggtaccgtaaaaccctaattccttctttggttagtgaca |
44298342 |
T |
|
| Q |
110 |
gnnnnnnnccccaaaagtgatacttattcagctgttgcgtatttatatgccacgttgattggatgacacttcaagtagagagagatctagtactctcctg |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44298343 |
gaaaaaa-ccccaaaagtgatacttattcagctgttgcgtatttatatgccacgttgattggatgacacttcaagtagagagagatctagtactctcctg |
44298441 |
T |
|
| Q |
210 |
caagaatagaatatgctcaattcatcatggactggactttatggcccgactattactttgagggttgttgatatttgcacctg-nnnnnnnnnaatgtac |
308 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44298442 |
caagaatagaatatgctcaattcatcacggactggactttatggcccgactattactttgagggttgttgatatttgcacctgtgttttttttaatgtac |
44298541 |
T |
|
| Q |
309 |
ccctttatgttttatcacatggaagacacatgtgatgccatcttccctctttattagagatgtccattttcatccgaaagtagggaccatgaaggactac |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44298542 |
ccctttatgttttatcacatggaagacacatgtgatgccatcttccctctttattagagatgtccattttcatccgaaagtagggaccatgaatgactac |
44298641 |
T |
|
| Q |
409 |
ccccattcaaggcctattggtttgcggggaatgct |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44298642 |
ccccattcaaggcctattggtttgcggggaatgct |
44298676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University