View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_17 (Length: 441)
Name: NF18664_low_17
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 49952094 - 49951686
Alignment:
| Q |
16 |
catcatcaagatatggaagggacattgaattggggaaggagctattcaggagg------aggaggacagcagcatcgtttagatacaaatactcctaatt |
109 |
Q |
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| T |
49952094 |
catcatcaagatatggaagggacattgaattggggaaggagctattcaggaggtggaggaggaggacagcagcatcgtttagatacaaatactcctaatt |
49951995 |
T |
|
| Q |
110 |
cagcagcattgatcaatcggtttcaagatggtttctaatgagagtgagagagagattctgtgtgtgattgtgttgatctgttcaatgataacaaaatgtg |
209 |
Q |
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| T |
49951994 |
cagcagcattgatcaatcggtttcaagatggtttctaatgagagtgagagagagattctgtgtgtgattgtgttgatctgttcaatgataacaaaatgtg |
49951895 |
T |
|
| Q |
210 |
acagatgctaagggggtgatgatgagtcatnnnnnnnnnnnnnnaatgtggtttggatttattttggtttttatgttaaatttttactacaacagtaact |
309 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49951894 |
acagatgctaagggggtgatgatgagtcatgagagagagagagaaatgtggtttggttttattttggtttttatgttaaatttttactacaacagtaact |
49951795 |
T |
|
| Q |
310 |
aaggacaccttttgagatcattcacacgctcagctactttggcttggagctgtgggatctatgggaattaacaaacgacaagttcgatatcaactgaaac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49951794 |
aaggacaccttttgagatcattcacacgctcagctactttggcttggagctgtgggatctatgggaattaacaaacgacaagttcgatatcaactgaaac |
49951695 |
T |
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| Q |
410 |
tttcctatc |
418 |
Q |
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| T |
49951694 |
tttcctatc |
49951686 |
T |
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