View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18664_low_2 (Length: 711)

Name: NF18664_low_2
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18664_low_2
NF18664_low_2
[»] chr8 (11 HSPs)
chr8 (16-337)||(3807761-3808081)
chr8 (403-697)||(3805757-3806054)
chr8 (78-331)||(26946077-26946324)
chr8 (420-484)||(8059682-8059746)
chr8 (495-563)||(17520299-17520367)
chr8 (419-484)||(11793483-11793548)
chr8 (340-383)||(24797167-24797211)
chr8 (419-453)||(3524394-3524428)
chr8 (419-453)||(22193357-22193391)
chr8 (496-562)||(39143441-39143507)
chr8 (419-484)||(21566744-21566809)
[»] chr5 (9 HSPs)
chr5 (37-278)||(28753909-28754150)
chr5 (78-337)||(6133283-6133537)
chr5 (487-563)||(16500467-16500543)
chr5 (340-383)||(25701533-25701577)
chr5 (499-562)||(10173865-10173928)
chr5 (341-383)||(16823133-16823176)
chr5 (418-448)||(7918467-7918497)
chr5 (426-484)||(35705042-35705100)
chr5 (419-448)||(34984855-34984884)
[»] chr2 (8 HSPs)
chr2 (16-285)||(9011042-9011307)
chr2 (81-337)||(38415336-38415584)
chr2 (416-484)||(4226108-4226176)
chr2 (426-484)||(14780562-14780620)
chr2 (420-458)||(40755644-40755682)
chr2 (419-484)||(37480124-37480189)
chr2 (419-484)||(41908600-41908665)
chr2 (495-560)||(41983430-41983495)
[»] chr7 (15 HSPs)
chr7 (78-329)||(1756198-1756444)
chr7 (496-563)||(7712636-7712703)
chr7 (496-562)||(24193507-24193573)
chr7 (419-467)||(22760912-22760960)
chr7 (423-486)||(20468284-20468347)
chr7 (419-482)||(38374563-38374626)
chr7 (496-562)||(8149537-8149603)
chr7 (419-484)||(22308105-22308170)
chr7 (416-484)||(29538524-29538592)
chr7 (496-563)||(30153274-30153340)
chr7 (491-558)||(32915880-32915947)
chr7 (340-382)||(36675601-36675644)
chr7 (340-383)||(45350053-45350096)
chr7 (419-484)||(5273552-5273617)
chr7 (419-452)||(19553502-19553535)
[»] chr3 (5 HSPs)
chr3 (69-285)||(28721359-28721576)
chr3 (487-560)||(2229902-2229975)
chr3 (419-484)||(9345222-9345287)
chr3 (419-484)||(51903840-51903905)
chr3 (419-484)||(54990751-54990816)
[»] chr6 (8 HSPs)
chr6 (38-285)||(21075813-21076068)
chr6 (53-163)||(1120834-1120944)
chr6 (90-285)||(21052591-21052788)
chr6 (184-285)||(1120741-1120840)
chr6 (202-280)||(4742359-4742438)
chr6 (504-563)||(2720293-2720352)
chr6 (438-484)||(10052460-10052506)
chr6 (419-484)||(24333987-24334052)
[»] chr4 (15 HSPs)
chr4 (117-285)||(30253433-30253602)
chr4 (419-484)||(32992661-32992726)
chr4 (340-383)||(52581457-52581500)
chr4 (423-481)||(8325344-8325402)
chr4 (419-484)||(46295146-46295211)
chr4 (500-564)||(25442271-25442335)
chr4 (419-455)||(38838846-38838882)
chr4 (419-451)||(44865383-44865415)
chr4 (498-560)||(1871198-1871259)
chr4 (340-381)||(22647112-22647154)
chr4 (338-378)||(2655028-2655069)
chr4 (419-484)||(2732043-2732108)
chr4 (487-560)||(19902001-19902074)
chr4 (419-484)||(20281154-20281219)
chr4 (419-448)||(37274457-37274486)
[»] chr1 (15 HSPs)
chr1 (487-563)||(32887863-32887939)
chr1 (419-481)||(43446012-43446074)
chr1 (340-383)||(9042530-9042574)
chr1 (340-383)||(29981819-29981863)
chr1 (487-562)||(5047463-5047538)
chr1 (417-484)||(10150831-10150898)
chr1 (417-484)||(16893441-16893508)
chr1 (417-484)||(39966140-39966207)
chr1 (419-449)||(24019072-24019102)
chr1 (419-481)||(45266883-45266945)
chr1 (419-452)||(19528321-19528354)
chr1 (419-484)||(31605810-31605875)
chr1 (419-484)||(36371519-36371584)
chr1 (487-560)||(36700894-36700967)
chr1 (487-560)||(36716998-36717071)
[»] scaffold0194 (1 HSPs)
scaffold0194 (419-463)||(13029-13073)
[»] scaffold0004 (1 HSPs)
scaffold0004 (419-484)||(81526-81591)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 3808081 - 3807761
Alignment:
Q  16 atttagcagactggaaaggggggaagaattttttgtacggctgaaggaaaaactcaaggttttagttttctataatgggtgggggcatacttgtattcca 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808081 atttagcagactggaaagggtggaagaattttttgtacggctgaaggaaaaactcaaggttttagttttctataatgggtgggggcatacttgtattcca 3807982  T
Q  116 gtatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataattgtttttatgtgataatggttattgaattgagacattgtattgttt 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3807981 atatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataattgtttttctgtgataatggttattgaattgagacattgtattgttt 3807882  T
Q  216 ctactttggaagatttgtattattgataggtgttctctttcgataaaagttgtagcttataagaagaaaaaacattctacctattactttgtcccaaatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  |||||| |||||||||||| ||||||||||||||    
T  3807881 ctactttggaagatttgtattattgataggtgttctctttcaataaaagttgtagcttataa-agaaaaaaatattctacctattgctttgtcccaaatt 3807783  T
Q  316 taactctcaagatagcctttaa 337  Q
    | ||||||||||||||||||||    
T  3807782 tgactctcaagatagcctttaa 3807761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 403 - 697
Target Start/End: Complemental strand, 3806054 - 3805757
Alignment:
Q  403 aatagatcattgaatactcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctttatttcaaacatttttgt 502  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||| || |||||||||||||||| ||||||||| |||||||    
T  3806054 aatagatcattgaatactcctcctcaaggtcgtaggtttgattctctctgatgtcagtttgaatggcctagtttagcttcttcatttcaaacttttttgt 3805955  T
Q  503 gtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactctgtgatttccaacttc---cagaaaatttaaaatatcaat 599  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  3805954 gtctttatctgtccaaataaaaaaaatagagatgatcataaatagagaggatcttaactctgtgatttccaacttccatcagaaattttaaaatatcaat 3805855  T
Q  600 aatgtcacatgaattataaaactattcactagaatgaacattaatatgatgtaactattaaatggattgtcgagcccataaactctacaaaagaaatt 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  3805854 aatgtcacatgaattataaaactattcactagaatgaacattaatatgatataacttttaaatggattgtcgagcccataaactctacaaaagaaatt 3805757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 78 - 331
Target Start/End: Complemental strand, 26946324 - 26946077
Alignment:
Q  78 tagttttctataatgggtgggggcatacttgtattccagtatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataattgttttta 177  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||   |||||||||| ||| |||||||||||| ||||      
T  26946324 tagttttctataatgggtgagggcatacttgtattcaaatatattgaagttgtaataagatct---gaaatgtttaacaaatggtttataatttttttcc 26946228  T
Q  178 tgtgataatggttattgaattgagacattgtattgtttctactttggaagatttgtattattgataggtgttctctttcgataaaagttgtagcttataa 277  Q
    | ||| |||||||||  |||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||     
T  26946227 tatgaaaatggttatcaaattgagatattgtattgtttctagtttggaatatttgtattgttgattggtgttctctttcaataaaagttgtagcttata- 26946129  T
Q  278 gaagaaaaaacattctacctattactttgtcccaaatttaactctcaagatagc 331  Q
      ||||||||| || || ||||| || |||||||||||| ||||||||||||||    
T  26946128 -gagaaaaaac-ttatagctattgctctgtcccaaatttgactctcaagatagc 26946077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 8059682 - 8059746
Alignment:
Q  420 tcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||||||||||    
T  8059682 tcctcctcaaggtctcaggttccattctccctgatgtcaatttgagtgagctagtttagcttctt 8059746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 17520367 - 17520299
Alignment:
Q  495 atttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactct 563  Q
    |||||||||| ||||||| | ||||||||| |||||| || ||||||||||| |||| |||||||||||    
T  17520367 atttttgtgtttttatctcttcaaataaaaaaaatagggaggatcataaatggagagaatcttaactct 17520299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 11793548 - 11793483
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||||||||| |||||| |||| || || |||| |||  |||||||||||||||    
T  11793548 ctcctcctcaaggtcttaggtttgattcttcccggtgccaatttgggtgggctagtttagcttctt 11793483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 24797211 - 24797167
Alignment:
Q  340 gtggcggagcccttcatgagctggg-tgggccacggcccatccgg 383  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  24797211 gtggcggagcccttcatgggctggggtgggccacggcccatccgg 24797167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 453
Target Start/End: Complemental strand, 3524428 - 3524394
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccga 453  Q
    ||||||||||||||||||||||| |||||||||||    
T  3524428 ctcctcctcaaggtcttaggttcaattctccccga 3524394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 453
Target Start/End: Complemental strand, 22193391 - 22193357
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccga 453  Q
    |||||||||||||||||||||||||||||| ||||    
T  22193391 ctcctcctcaaggtcttaggttcgattctctccga 22193357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 39143507 - 39143441
Alignment:
Q  496 tttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactc 562  Q
    ||||||||| |||| || |||||||||||||||| ||||  | ||| ||||||||||||| ||||||    
T  39143507 tttttgtgtttttacctctccaaataaaagaaatggagaaaaacattaatgaagaggatcctaactc 39143441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 21566809 - 21566744
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||| |||||||||| ||||||||||||  || |||||| ||||| ||| ||||||| |||||||    
T  21566809 ctcctactcaaggtctcaggttcgattctttccaatgtcaatttgaatgagctagttttgcttctt 21566744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 37 - 278
Target Start/End: Complemental strand, 28754150 - 28753909
Alignment:
Q  37 ggaagaattttttgtacggctgaaggaaaaactcaaggttttagttttctataatgggtgggggcatacttgtattccagtatattgaagttgtaataag 136  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  28754150 ggaagaattttttgtacggctgaaggaaaaactcaaggatttagttttctataatgggtgggggcatacttgtattcaaatatatcgaagttgtaataag 28754051  T
Q  137 atcttctgaaatgtttatcaactggtttataattgtttttatgtgataatggttattgaattgagacattgtattgtttctactttggaagatttgtatt 236  Q
    ||||||| ||||||||||||| |||| ||||||  ||||| |||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  28754050 atcttctaaaatgtttatcaaatggtatataatcatttttctgtgataatggttatcaaattgagacattgtattgtttctagtttggaagatttgtatt 28753951  T
Q  237 attgataggtgttctctttcgataaaagttgtagcttataag 278  Q
    ||| |||| || |||||||| |||||||||||||||||||||    
T  28753950 attcatagatgctctctttcaataaaagttgtagcttataag 28753909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 78 - 337
Target Start/End: Complemental strand, 6133537 - 6133283
Alignment:
Q  78 tagttttctataatgggtgggggcatacttgtattccagtatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataattgttttta 177  Q
    |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||   ||||||||||||||||| |||||||||||| |||||     
T  6133537 tagttttctataatgggtgggggcatacttgtattcaaatgtattgaagttgtaataaga---tctgaaatgtttatcaaatggtttataattttttttc 6133441  T
Q  178 tgtgataatggttattgaattgagacattgtattgtttctactttggaagatttgtat-tattgataggtgttctctttcgataaaagttgtagcttata 276  Q
    | |||||||||||||   |||||||| |||||||| ||||| ||||||| ||||||||   ||||| |||||||||||||  |||||| | |||||||||    
T  6133440 tatgataatggttatcacattgagaccttgtattg-ttctagtttggaatatttgtatcgtttgattggtgttctctttcagtaaaagctttagcttata 6133342  T
Q  277 agaagaaaaaacattctacctattactttgtcccaaatttaactctcaagatagcctttaa 337  Q
    |||  ||||||  || || ||||| || ||| |||||||| |||||||||| ||| |||||    
T  6133341 aga--aaaaaagcttatagctattgctctgttccaaatttgactctcaagacagcttttaa 6133283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 563
Target Start/End: Complemental strand, 16500543 - 16500467
Alignment:
Q  487 tttcaaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactct 563  Q
    |||||||| |||||||||  |||||| ||||||| |||||||| |||| || |||||||||||| ||| || |||||    
T  16500543 tttcaaacttttttgtgttcttatctctccaaatgaaagaaatggagaggaacataaatgaagatgatattcactct 16500467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 25701577 - 25701533
Alignment:
Q  340 gtggcggagcccttcatgagctggg-tgggccacggcccatccgg 383  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  25701577 gtggcggagcccttcatgggctggggtgggccacggcccatccgg 25701533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 562
Target Start/End: Complemental strand, 10173928 - 10173865
Alignment:
Q  499 ttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactc 562  Q
    |||||||||||||| ||||||| || ||||| |||| |  |||||||| |||||||||||||||    
T  10173928 ttgtgtctttatctctccaaatgaaggaaatggagaaggacataaatggagaggatcttaactc 10173865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 16823133 - 16823176
Alignment:
Q  341 tggcggagcccttcatgagctggg-tgggccacggcccatccgg 383  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  16823133 tggcggagcccttcatgggctggggtgggccacggcccatccgg 16823176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 7918497 - 7918467
Alignment:
Q  418 actcctcctcaaggtcttaggttcgattctc 448  Q
    |||||||||||||||||||||||||||||||    
T  7918497 actcctcctcaaggtcttaggttcgattctc 7918467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 484
Target Start/End: Original strand, 35705042 - 35705100
Alignment:
Q  426 tcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||||||| ||||||||||||||||| ||||| |||| |||  ||| |||||||||||    
T  35705042 tcaaggtctcaggttcgattctccccggtgtcaatttgggtgggctaatttagcttctt 35705100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 448
Target Start/End: Original strand, 34984855 - 34984884
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctc 448  Q
    ||||||||||||||||||||||||||||||    
T  34984855 ctcctcctcaaggtcttaggttcgattctc 34984884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 9011042 - 9011307
Alignment:
Q  16 atttagcagactggaaaggggggaagaattttttgtacggctgaaggaaaaactcaaggttttagttttctataatgggtgggggcatac-ttgtattcc 114  Q
    |||| |||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||     
T  9011042 attttgcagactggaaagcatggaagaattttttgtacggctgaatgaaaaactcaaggttttagttttttataatgggtggtggcatactttgtattca 9011141  T
Q  115 agtatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataattgtttttatgtgataatggttattgaattgagacattgtattgtt 214  Q
    | ||||||||| ||||||||||||||||||||||||||||||  |||||||||||| | ||| ||||| |||||     | ||  |||||||||||||||    
T  9011142 aatatattgaaattgtaataagatcttctgaaatgtttatcagatggtttataattatgtttctgtgacaatgg-----gtatcaagacattgtattgtt 9011236  T
Q  215 tctactttggaagatttgtattattgataggtgttctctttcgataaaagttgtagcttataagaagaaaa 285  Q
    |||| ||||||| |||||||||||||||||  |||||||||| | ||||||||||||||||||||| ||||    
T  9011237 tctagtttggaaaatttgtattattgatagaagttctctttcaaaaaaagttgtagcttataagaaaaaaa 9011307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 81 - 337
Target Start/End: Original strand, 38415336 - 38415584
Alignment:
Q  81 ttttctataatgggtgggggcatacttgtattccagtatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataat--tgtttttat 178  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||  | ||||| |    
T  38415336 ttttttataatgggtgggggcatacttgtattcaagtatattgaagttgtaataagatcttctgaaatgtttatcaaatagtttataattattttttttt 38415435  T
Q  179 gtgataatggttattgaattgagacattgtattgtttctactttggaagatttgtattattgataggtgttctctttcgataaaagttgtagcttataag 278  Q
    |||| |||||||||         | ||| ||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  38415436 gtgacaatggttat--------caaattttattgtttcttgtttggaagatttgtattattgataggtgttctctttcaataaaagttatagcttataag 38415527  T
Q  279 aagaaaaaacattctacctattactttgtcccaaatttaactctcaagatagcctttaa 337  Q
    |  |||||| ||| || || ||  || ||||||||||| |||| ||||||||| |||||    
T  38415528 a--aaaaaagattatagcttttgtttcgtcccaaatttgactcacaagatagcttttaa 38415584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 4226108 - 4226176
Alignment:
Q  416 atactcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||||||||||||||| | |||||||||| || | ||||| | ||||| ||| |||||||||||||||    
T  4226108 atactcctcctcaaggtttcaggttcgattatctctgatgttaatttgaatgaactagtttagcttctt 4226176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 484
Target Start/End: Original strand, 14780562 - 14780620
Alignment:
Q  426 tcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||||||| ||||||||| |||||||||| || ||||||||  ||| |||||||||||    
T  14780562 tcaaggtctcaggttcgatcctccccgatgccaatttgagtgggctaatttagcttctt 14780620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 40755644 - 40755682
Alignment:
Q  420 tcctcctcaaggtcttaggttcgattctccccgatgtca 458  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  40755644 tcctcctcaaggtcttaggttcgattctctctgatgtca 40755682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 37480124 - 37480189
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| ||||||||||||||||| |  || |||| |||  ||| |||||||||||    
T  37480124 ctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaatttagcttctt 37480189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 41908665 - 41908600
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| | |||||||| |||||| || || |||| |||  |||||||||||||||    
T  41908665 ctcctcctcaaggtctcaagttcgattatccccggtgccaatttgggtgggctagtttagcttctt 41908600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 560
Target Start/End: Original strand, 41983430 - 41983495
Alignment:
Q  495 atttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaac 560  Q
    |||| ||||||||||||| ||||||| |||||||| ||||    |||||||| |||||||||||||    
T  41983430 atttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaac 41983495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 78 - 329
Target Start/End: Original strand, 1756198 - 1756444
Alignment:
Q  78 tagttttctataatgggtgggggcatacttgtattccagtatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataattgttttta 177  Q
    |||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||   |||||||||||||| |||||||||||| |||||     
T  1756198 tagttttctataatgg-tgggcgcatacttgtattcaattatattgaagttgtaataagatct---gaaatgtttatcaaatggtttataattttttttc 1756293  T
Q  178 tgtgataatggttattgaattgagacattgtattgtttctactttggaagatttgtattattgataggtgttctctttcgataaaagttgtagcttataa 277  Q
    | |||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||  ||||| ||||||| ||||| ||||||||||||||||||||    
T  1756294 tatgataatggttatcaaattgagacattgtattgtttctagtttggaatatttgtatggttgattggtgttcactttcaataaaagttgtagcttataa 1756393  T
Q  278 gaagaaaaaacattctacctattactttgtcccaaatttaactctcaagata 329  Q
    ||| | ||||  || || ||||| || |||||||||||| ||||||||||||    
T  1756394 gaa-agaaaagcttatagctattgctctgtcccaaatttgactctcaagata 1756444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 563
Target Start/End: Original strand, 7712636 - 7712703
Alignment:
Q  496 tttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactct 563  Q
    ||||||| ||||||||| | ||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  7712636 tttttgtatctttatcttttcaaatgatagaaatggagatgatgataaatgaagaggatcttaactct 7712703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 24193573 - 24193507
Alignment:
Q  496 tttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactc 562  Q
    ||||||| ||||||||| |||||||||| ||||| |||||||| ||| ||| |||||||||||||||    
T  24193573 tttttgtatctttatctctccaaataaatgaaatggagatgatgatagatggagaggatcttaactc 24193507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 22760912 - 22760960
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtg 467  Q
    |||||||||||||||| |||||||||||||||||||| || ||||||||    
T  22760912 ctcctcctcaaggtctcaggttcgattctccccgatgccaatttgagtg 22760960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 486
Target Start/End: Complemental strand, 20468347 - 20468284
Alignment:
Q  423 tcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttcttta 486  Q
    |||||||||||||||||||||||||||| |||| || |||| |||  |||||||| ||||||||    
T  20468347 tcctcaaggtcttaggttcgattctcccagatgccaatttgggtgggctagtttaacttcttta 20468284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 419 - 482
Target Start/End: Complemental strand, 38374626 - 38374563
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttc 482  Q
    |||||||||||||||||||||||||||||||||| || || |||  |||  |||||||||||||    
T  38374626 ctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagtttagcttc 38374563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 8149603 - 8149537
Alignment:
Q  496 tttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactc 562  Q
    ||||||||||||||||| |||||||   ||||||||||| ||| ||||||  |||||||||||||||    
T  8149603 tttttgtgtctttatctctccaaatggtagaaatagagaggataataaattgagaggatcttaactc 8149537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 22308105 - 22308170
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||||| ||||||||||| ||||||  | ||||| ||| ||| |||||||||||    
T  22308105 ctcctcctcaaggtcttaagttcgattctcaccgatgcaaatttgaatgagctaatttagcttctt 22308170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 484
Target Start/End: Complemental strand, 29538592 - 29538524
Alignment:
Q  416 atactcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||| |||||||||| | ||||||||||||| |||| || |||||||||  ||||||||| ||||    
T  29538592 atactccttctcaaggtctcaagttcgattctccctgatgccaatttgagtgagttagtttagcatctt 29538524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 563
Target Start/End: Original strand, 30153274 - 30153340
Alignment:
Q  496 tttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactct 563  Q
    ||||| ||||||||||| |||||||  |||||  | ||||||||||||||| ||||||||||||||||    
T  30153274 tttttttgtctttatctctccaaatggaagaatga-agatgatcataaatggagaggatcttaactct 30153340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 32915947 - 32915880
Alignment:
Q  491 aaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatctta 558  Q
    |||| ||||||||||||||||| |||||||  ||||||| |||| || ||||||||  ||||||||||    
T  32915947 aaacttttttgtgtctttatctctccaaatggaagaaatggagaagaacataaatggggaggatctta 32915880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 36675644 - 36675601
Alignment:
Q  340 gtggcggagcccttcatgagctggg-tgggccacggcccatccg 382  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  36675644 gtggcggagcccttcatgggctggggtgggccacggcccatccg 36675601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 45350053 - 45350096
Alignment:
Q  340 gtggcggagcccttcatgagctgggtgggccacggcccatccgg 383  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||    
T  45350053 gtggcggagcccttcatgggctgggtgggccacggtccacccgg 45350096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 5273617 - 5273552
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||||||||| |||| || ||| || || |||| |||  |||||||||||||||    
T  5273617 ctcctcctcaaggtcttaggtttgattgtctccggtgccaatttgggtgggctagtttagcttctt 5273552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 19553502 - 19553535
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccg 452  Q
    ||||||||||||||||||||||| ||||||||||    
T  19553502 ctcctcctcaaggtcttaggttcaattctccccg 19553535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 8e-63; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 69 - 285
Target Start/End: Original strand, 28721359 - 28721576
Alignment:
Q  69 tcaaggttttagttttctataatgggtgggggcatacttgtattccagtatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  28721359 tcaaggttttagttttctataatgggtgggggcatacttgtattcaaatatattgaagttgtaataagatcttccaaaatgtttatcaaatggtttataa 28721458  T
Q  169 t---tgtttttatgtgataatggttattgaattgagacattgtattgtttctactttggaagatttgtattattgataggtgttctctttcgataaaagt 265  Q
    |   | |||||||||||||| ||| ||  ||||||||||||| |||||||||| |||| ||||||||||||||||||||  |||| ||||| ||||| ||    
T  28721459 taaatatttttatgtgataagggtaatcaaattgagacattgaattgtttctaatttgaaagatttgtattattgatag--gttcgctttcaataaaggt 28721556  T
Q  266 tgtagcttataagaagaaaa 285  Q
    || |||||||||||| ||||    
T  28721557 tgcagcttataagaaaaaaa 28721576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 560
Target Start/End: Complemental strand, 2229975 - 2229902
Alignment:
Q  487 tttcaaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaac 560  Q
    |||||||  ||| ||||||||||||| ||||||| |||||||||||||    ||||||||||||||||| ||||    
T  2229975 tttcaaaattttatgtgtctttatctctccaaattaaagaaatagagaaacacataaatgaagaggatcctaac 2229902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 9345287 - 9345222
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||| ||||||||||||||||||||||| | ||||| || | |||| ||| ||||| |||||    
T  9345287 ctcctcctaaaggtcttaggttcgattctccctggtgtcaattagggtgatctaatttagtttctt 9345222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 51903905 - 51903840
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||  ||||| ||||||||||||| ||| ||||| ||||||||  ||| |||||||||||    
T  51903905 ctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagcttctt 51903840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 54990751 - 54990816
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| |||||||||||||| ||||| || |||  |||  ||| |||||||||||    
T  54990751 ctcctcctcaaggtctcaggttcgattctcctcgatggcaatttaggtgggctaatttagcttctt 54990816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 21076068 - 21075813
Alignment:
Q  38 gaagaattttttgtacggctgaaggaaaaactc--aaggttttagttttctataatgggtggg----ggcatacttgtattccagtatattgaagttgta 131  Q
    |||||||| |||| |||| ||||||||||||||  |||||||||||| | ||  |||| ||||    || | |||||||||| | |||||||||||||||    
T  21076068 gaagaattctttggacggttgaaggaaaaactctcaaggttttagttatatacgatggatgggtggcggaaaacttgtattcaaatatattgaagttgta 21075969  T
Q  132 ataagatcttctgaaat-gtttatcaactggtttataattgtttttatgtgataatggttattgaattgagacattgtattgtttctactttggaagat- 229  Q
    |||||||||| |||||| | ||||||| ||||||| |||| |||||   |||||||||||||  |||| |||||||||| |||| ||| ||||||||||     
T  21075968 ataagatcttgtgaaatgggttatcaaatggtttagaattatttttccatgataatggttatcaaatttagacattgtaatgttcctagtttggaagatc 21075869  T
Q  230 ttgtattattgataggtgttctctttcgataaaagttgtagcttataagaagaaaa 285  Q
    |||| |||||| ||||||||||||||| || |||||| ||||||||||||| ||||    
T  21075868 ttgtgttattgctaggtgttctctttcaatgaaagttttagcttataagaaaaaaa 21075813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 1120944 - 1120834
Alignment:
Q  53 cggctgaaggaaaaactcaaggttttagttttctataatgggtgggggcatacttgtattccagtatattgaagttgtaataagatcttctgaaatgttt 152  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||| |||||||||||||||| |||||||||    
T  1120944 cggctgaaggaaaaactcaaggttttagttttctataatggatgggggcatacttgtattcttatatattgaaattgtaataagatcttcggaaatgttt 1120845  T
Q  153 atcaactggtt 163  Q
    ||||| |||||    
T  1120844 atcaaatggtt 1120834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 90 - 285
Target Start/End: Complemental strand, 21052788 - 21052591
Alignment:
Q  90 atgggtgggggcatacttgtattccagtatattgaagttgtaataagatcttctgaaat-gtttatcaactggtttataattgtttttatgtgataatgg 188  Q
    |||||||| || | |||||||||| | ||||||||||||||||||||||||| |||||| | ||||||| ||||||| |||| |||||   |||||||||    
T  21052788 atgggtggcggaaaacttgtattcaaatatattgaagttgtaataagatcttgtgaaatgggttatcaaatggtttagaattatttttccatgataatgg 21052689  T
Q  189 ttattgaattgagacattgtattgtttctactttggaagat-ttgtattattgataggtgttctctttcgataaaagttgtagcttataagaagaaaa 285  Q
    ||||  |||| |||||||||| |||| ||| |||||||||| |||| |||||| ||||||||||||||| || |||||| ||||||||||||| ||||    
T  21052688 ttatcaaatttagacattgtaatgttcctagtttggaagatcttgtgttattgctaggtgttctctttcaatgaaagttttagcttataagaaaaaaa 21052591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 184 - 285
Target Start/End: Complemental strand, 1120840 - 1120741
Alignment:
Q  184 aatggttattgaattgagacattgtattgtttctactttggaagatttgtattattgataggtgttctctttcgataaaagttgtagcttataagaagaa 283  Q
    |||||||||  |||||||||||||||||||||||| | ||||||||||| |||||||||||   ||| ||||| |||||||||| |||||||||||| ||    
T  1120840 aatggttatcaaattgagacattgtattgtttctagtctggaagatttgaattattgatag--attcgctttcaataaaagttgcagcttataagaaaaa 1120743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 4742438 - 4742359
Alignment:
Q  202 acattgtattgtttctactttggaagat-ttgtattattgataggtgttctctttcgataaaagttgtagcttataagaa 280  Q
    ||||||||||||| ||| |||||||||| |||| |||||| ||||||||||||||| |||| |||| |||||||||||||    
T  4742438 acattgtattgttcctagtttggaagatcttgtgttattgctaggtgttctctttcaataatagttttagcttataagaa 4742359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 2720352 - 2720293
Alignment:
Q  504 tctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactct 563  Q
    ||||||||| |  ||||||||||||| |||||||||||| ||| ||||||| ||||||||    
T  2720352 tctttatctctttaaataaaagaaatggagatgatcatagatggagaggatattaactct 2720293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 10052460 - 10052506
Alignment:
Q  438 gttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||| ||||||||||||||| |||| ||||||||| |||||    
T  10052460 gttcgattcttcccgatgtcagtttgtgtgagctagtttagtttctt 10052506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 24334052 - 24333987
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| |||||| |||||| ||| || || |||| |||  |||||||||||||||    
T  24334052 ctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagtttagcttctt 24333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 117 - 285
Target Start/End: Complemental strand, 30253602 - 30253433
Alignment:
Q  117 tatattgaagttgtaataagatcttctgaaatgtttatcaactggtttataat---tgtttttatgtgataatggttattgaattgagacattgtattgt 213  Q
    |||||| |||||| ||||| |||||| |||||||||||||| |||||||||||   | |||||||||||||||||| ||  |||||||||||||||||||    
T  30253602 tatattaaagttgcaataacatcttccgaaatgtttatcaaatggtttataataaatatttttatgtgataatggtaatcaaattgagacattgtattgt 30253503  T
Q  214 ttctactttggaagatttgtattattgataggtgttctctttcgataaaagttgtagcttataagaagaaaa 285  Q
    ||||| | || ||||||||||||||||||||  |||| ||||| ||||| |||| |||||||||||| ||||    
T  30253502 ttctagtctgaaagatttgtattattgatag--gttcgctttcaataaacgttgcagcttataagaaaaaaa 30253433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 32992661 - 32992726
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| | ||||||||||||||| ||||| ||||||||  |||||||||||||||    
T  32992661 ctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttctt 32992726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 52581457 - 52581500
Alignment:
Q  340 gtggcggagcccttcatgagctgggtgggccacggcccatccgg 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  52581457 gtggcggagcccttcatgggctgggtgggccacggcccatccgg 52581500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 8325402 - 8325344
Alignment:
Q  423 tcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagctt 481  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||  ||||||||||||    
T  8325402 tcctcaaggtcttaggttcgattctccccggtgtcaatttgggtgggctagtttagctt 8325344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 46295146 - 46295211
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| ||||||||||||||||| || || |||| |||  |||||||||||||||    
T  46295146 ctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagtttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 564
Target Start/End: Original strand, 25442271 - 25442335
Alignment:
Q  500 tgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactctg 564  Q
    ||||||||||||| |||||||  ||||||| |||| |  |||||||| |||||||||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccataaatggagaggatcttaactctg 25442335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 38838846 - 38838882
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatg 455  Q
    |||||||||||||||||||||||||||||| ||||||    
T  38838846 ctcctcctcaaggtcttaggttcgattctctccgatg 38838882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 44865383 - 44865415
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctcccc 451  Q
    |||||||||||||||||||||||||||||||||    
T  44865383 ctcctcctcaaggtcttaggttcgattctcccc 44865415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 1871259 - 1871198
Alignment:
Q  498 tttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaac 560  Q
    ||||||||||||||| ||||||||||| |||| || ||||| ||||||| | |||||||||||    
T  1871259 tttgtgtctttatctctccaaataaaaaaaattga-atgattataaatggaaaggatcttaac 1871198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 22647112 - 22647154
Alignment:
Q  340 gtggcggagcccttcatgagctg-ggtgggccacggcccatcc 381  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  22647112 gtggcggagcccttcatgggctgaggtgggccacggcccatcc 22647154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 2655069 - 2655028
Alignment:
Q  338 cggtggcggagcccttcatgagct-gggtgggccacggccca 378  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  2655069 cggtggcggagcccttcatgggctggggtgggccacggccca 2655028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 2732043 - 2732108
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||||||||| |||| ||||||||||||| ||| || || |||| |||  |||||||||||||||    
T  2732043 ctcctcctcaaagtctcaggttcgattctctccggtgccaatttgggtgggctagtttagcttctt 2732108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 560
Target Start/End: Original strand, 19902001 - 19902074
Alignment:
Q  487 tttcaaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaac 560  Q
    |||||||  ||| ||||||||||||| |||||||  ||||||||||||    |||||||| |||||||||||||    
T  19902001 tttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacacataaatggagaggatcttaac 19902074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 20281219 - 20281154
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||  ||||||||| ||||||| || |||||||||||  ||| ||||| |||||    
T  20281219 ctcctcctcaaggtcccaggttcgatcctccccggtgccagtttgagtggactaatttagattctt 20281154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 37274486 - 37274457
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctc 448  Q
    ||||||||||||||||||||||||||||||    
T  37274486 ctcctcctcaaggtcttaggttcgattctc 37274457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 563
Target Start/End: Original strand, 32887863 - 32887939
Alignment:
Q  487 tttcaaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactct 563  Q
    |||||||| |||||| |||| ||||| ||||||| |||||||| |||| |||   ||||||||||||||||||||||    
T  32887863 tttcaaacttttttgagtctatatctctccaaatgaaagaaatggagaggatacaaaatgaagaggatcttaactct 32887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 481
Target Start/End: Original strand, 43446012 - 43446074
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagctt 481  Q
    |||||||||||||||| | ||||||||||||||| || || ||||||||  ||||||||||||    
T  43446012 ctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtttagctt 43446074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 9042574 - 9042530
Alignment:
Q  340 gtggcggagcccttcatgagctggg-tgggccacggcccatccgg 383  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  9042574 gtggcggagcccttcatgggctgggctgggccacggcccatccgg 9042530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 29981863 - 29981819
Alignment:
Q  340 gtggcggagcccttcatgagctggg-tgggccacggcccatccgg 383  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  29981863 gtggcggagcccttcatgggctggggtgggccacggcccatccgg 29981819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 562
Target Start/End: Original strand, 5047463 - 5047538
Alignment:
Q  487 tttcaaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaactc 562  Q
    |||||||| |||||||| |||||||| || ||||  ||||||| |||||  | ||||||| |||||||||||||||    
T  5047463 tttcaaacttttttgtgcctttatctctctaaatggaagaaatggagatagtaataaatggagaggatcttaactc 5047538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 484
Target Start/End: Complemental strand, 10150898 - 10150831
Alignment:
Q  417 tactcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||||||||||| |||| |||||| |||||| | | ||||||||||||||  ||| |||||||||||    
T  10150898 tactcctcctcaaagtctcaggttcaattctctcaggtgtcagtttgagtggactaatttagcttctt 10150831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 16893441 - 16893508
Alignment:
Q  417 tactcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    ||||||||||| |||||| |||||||||| || ||| ||||| ||||||||  ||| |||||||||||    
T  16893441 tactcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaatttagcttctt 16893508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 39966140 - 39966207
Alignment:
Q  417 tactcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||||| ||||||| ||||||||| ||  | |||| |||  |||||||||||||||    
T  39966140 tactcctcctcaaggtctcaggttcgtttctccccggtgctaatttgggtgtgctagtttagcttctt 39966207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 449
Target Start/End: Original strand, 24019072 - 24019102
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctcc 449  Q
    |||||||||||||||||||||||||||||||    
T  24019072 ctcctcctcaaggtcttaggttcgattctcc 24019102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 481
Target Start/End: Original strand, 45266883 - 45266945
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagctt 481  Q
    |||||||||||||||| ||||||||||||||||| || || ||||  ||  ||||||||||||    
T  45266883 ctcctcctcaaggtctcaggttcgattctccccggtgccaatttggatgggctagtttagctt 45266945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 19528354 - 19528321
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccg 452  Q
    |||||||||||||||| |||||||||||||||||    
T  19528354 ctcctcctcaaggtctcaggttcgattctccccg 19528321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 31605875 - 31605810
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| | ||||||||||||||| || || |||| |||  |||||||||| ||||    
T  31605875 ctcctcctcaaggtctcaagttcgattctccccggtgccaatttgggtgggctagtttagcctctt 31605810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 36371519 - 36371584
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| ||||||||||||| | |||| || |||||| |   ||||||||||||||    
T  36371519 ctcctcctcaaggtctgaggttcgattctctctgatgccaatttgagggggttagtttagcttctt 36371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 560
Target Start/End: Original strand, 36700894 - 36700967
Alignment:
Q  487 tttcaaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaac 560  Q
    |||||||  ||||||||||| ||||| |||||||||||||||| |||| ||   |||||| ||||||| |||||    
T  36700894 tttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagaggatgttaac 36700967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 560
Target Start/End: Original strand, 36716998 - 36717071
Alignment:
Q  487 tttcaaacatttttgtgtctttatctgtccaaataaaagaaatagagatgatcataaatgaagaggatcttaac 560  Q
    |||||||  ||||||||||| ||||| |||||||||||||||| |||| ||   |||||| ||||||| |||||    
T  36716998 tttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagaggatgttaac 36717071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 463
Target Start/End: Complemental strand, 13073 - 13029
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttg 463  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||    
T  13073 ctcctcctcaaggtctcaggttcgattctctccgatgtcaatttg 13029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 81591 - 81526
Alignment:
Q  419 ctcctcctcaaggtcttaggttcgattctccccgatgtcagtttgagtgacctagtttagcttctt 484  Q
    |||||||||||||||| || |||||||||||| |||| || |||||| ||  ||||||| ||||||    
T  81591 ctcctcctcaaggtctcagattcgattctccctgatgccaatttgagggagttagtttaacttctt 81526  T

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