View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_27 (Length: 340)
Name: NF18664_low_27
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 52584626 - 52584311
Alignment:
| Q |
11 |
aatgatgtcaaactccatgatccatcaaaatcaatttgagaaccaagaactactaggtggtggttatgtttcatcttctttgagaaacaacaatgcatat |
110 |
Q |
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| T |
52584626 |
aatgatgtcaaactccatgacccatcaaaatcaatttgagaaccaagaactactaggtggtggttatgtttcatcttctttgagaaacaacaatgcatat |
52584527 |
T |
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| Q |
111 |
catgaatcacttggaacattttctaacaatattgggctagcacaaggttctgagatgagtcacacaagacatttgatggatctacttggtgcagcaaacg |
210 |
Q |
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| T |
52584526 |
catgaatcacttggaacattttctaacaatattgggctagcacaaggttctgagatgagtcacacaagacatttgatggatctacttggtgcagcaaacg |
52584427 |
T |
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| Q |
211 |
agaataatcaccagacacaacaaggcctatccctttctttaggctctcacatgcttgttgatgaatacagaaaccgttccttaaatcaaggtcttatgat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584426 |
agaataatcaccagacacaacaaggcctatccctttctttaggctctcacatgcttgttgatgaatacagaaaccgttccttaaatcaaggtcttatgat |
52584327 |
T |
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| Q |
311 |
caatccaagttacttc |
326 |
Q |
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|||||||||||||||| |
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| T |
52584326 |
caatccaagttacttc |
52584311 |
T |
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