View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_28 (Length: 324)
Name: NF18664_low_28
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 113 - 310
Target Start/End: Original strand, 13602699 - 13602895
Alignment:
| Q |
113 |
gatagggacaagctaagtaatgagagacacttgtattacttgattatggagatggtgcaataacacgtggagttgtgtatttagcaccattcctttgatt |
212 |
Q |
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| T |
13602699 |
gataggaacaagctatgtaatgagagacacttgtattacttgattatggagatggtgcaataacacgtggagttgtgtatttagcaccattcctttgatt |
13602798 |
T |
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| Q |
213 |
tcaactagaaggaatgactaaaatcttaacatttccttttaccaccaaatcctttagaaatggctgaatacaatagtatataatttataaagacatgt |
310 |
Q |
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| T |
13602799 |
tcaactagaaggaatgactaaaatcttaaca-ttccttttaccaccaaatcctttaggaatggttgaatacaagagtatataatttataaagacatgt |
13602895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13602472 - 13602509
Alignment:
| Q |
1 |
ttgttggtaagcatttcactgtactaagtaagaaaatg |
38 |
Q |
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| T |
13602472 |
ttgttggtaagcatttcactgtactaagtaagaaaatg |
13602509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 13602652 - 13602680
Alignment:
| Q |
58 |
atagtatcatactcgatatatacgtgttg |
86 |
Q |
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| T |
13602652 |
atagtatcatactcgatatatacgtgttg |
13602680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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