View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18664_low_29 (Length: 319)

Name: NF18664_low_29
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18664_low_29
NF18664_low_29
[»] chr1 (2 HSPs)
chr1 (107-319)||(5928004-5928216)
chr1 (259-319)||(4342386-4342446)
[»] chr3 (1 HSPs)
chr3 (218-319)||(7009461-7009556)
[»] chr8 (1 HSPs)
chr8 (259-319)||(19644507-19644567)
[»] chr5 (1 HSPs)
chr5 (259-319)||(22811179-22811239)
[»] chr7 (1 HSPs)
chr7 (107-185)||(20087911-20087989)
[»] chr4 (4 HSPs)
chr4 (112-185)||(22714601-22714674)
chr4 (112-185)||(22990551-22990624)
chr4 (259-319)||(22695043-22695103)
chr4 (112-185)||(28948858-28948931)
[»] scaffold0009 (1 HSPs)
scaffold0009 (112-185)||(200474-200547)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 107 - 319
Target Start/End: Complemental strand, 5928216 - 5928004
Alignment:
Q  107 tagaccttatatagaaccagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaacacatacatctaaaacctgtt 206  Q
    |||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5928216 tagagcttatatagaaccacttaaaactgaaatatagagtttattgaggataagtgcacaacaaatctgaagcaaaaaacacagacatctaaaacctgtt 5928117  T
Q  207 aatagtaaatataaagcactcatacagtacaaataatattcatcaatctcattatcatttgatgtaaaacatagaagctattttcaaactccatcaatat 306  Q
    || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5928116 aagagtaaatataaagcactcatacaatgcaaataatattcatcaatctcattatcatttgatgaaaaacatagaagctattttcaaactccatcaatat 5928017  T
Q  307 cattaatatttca 319  Q
    |||||||||||||    
T  5928016 cattaatatttca 5928004  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 4342446 - 4342386
Alignment:
Q  259 tatcatttgatgtaaaacatagaagctattttcaaactccatcaatatcattaatatttca 319  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4342446 tatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatatttca 4342386  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 7009556 - 7009461
Alignment:
Q  218 taaagcactcatacagtacaaataatattcatcaatctcattatcatttgatgtaaaacatagaagctattttcaaactccatcaatatcattaatattt 317  Q
    ||||||||||||||| | |||||||||||||| | |      ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7009556 taaagcactcatacaatgcaaataatattcattagt------atcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatattt 7009463  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 19644567 - 19644507
Alignment:
Q  259 tatcatttgatgtaaaacatagaagctattttcaaactccatcaatatcattaatatttca 319  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19644567 tatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatatttca 19644507  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 22811179 - 22811239
Alignment:
Q  259 tatcatttgatgtaaaacatagaagctattttcaaactccatcaatatcattaatatttca 319  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22811179 tatcatttgatgaaaaacatagaagctattttcaaactccatcaatatcattaatatttca 22811239  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 20087989 - 20087911
Alignment:
Q  107 tagaccttatatagaaccagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 185  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||    
T  20087989 tagagcttatatataaccagttaaaactgaaatatagagcttatggaggacaggtgaacaacaaatctgaaggaaaaaa 20087911  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 22714601 - 22714674
Alignment:
Q  112 cttatatagaaccagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 185  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  22714601 cttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaagcaaaaaa 22714674  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 22990624 - 22990551
Alignment:
Q  112 cttatatagaaccagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 185  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  22990624 cttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaagcaaaaaa 22990551  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 22695103 - 22695043
Alignment:
Q  259 tatcatttgatgtaaaacatagaagctattttcaaactccatcaatatcattaatatttca 319  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22695103 tatcatttgatgaaaagcatagaagctattttcaaactccatcaatatcattaatatttca 22695043  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 28948858 - 28948931
Alignment:
Q  112 cttatatagaaccagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 185  Q
    |||||||| ||| ||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||    
T  28948858 cttatatataactagttaaaactgaaatatagagtttaaggaggataagtgaacaacaaatccgaagcaaaaaa 28948931  T

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Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 200474 - 200547
Alignment:
Q  112 cttatatagaaccagttaaaactgaaatatagagcttatggaggataagtgcacaacaaatctgaagcaaaaaa 185  Q
    |||||||| ||| |||||||||||||||||| || |||||||||||||||| |||||||||| |||||||||||    
T  200474 cttatatataactagttaaaactgaaatatatagtttatggaggataagtgaacaacaaatccgaagcaaaaaa 200547  T

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