View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18664_low_3 (Length: 671)

Name: NF18664_low_3
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18664_low_3
NF18664_low_3
[»] chr5 (3 HSPs)
chr5 (1-660)||(5399818-5400481)
chr5 (508-541)||(38749571-38749604)
chr5 (504-548)||(14818307-14818351)
[»] scaffold0004 (1 HSPs)
scaffold0004 (507-544)||(101015-101052)
[»] chr6 (3 HSPs)
chr6 (508-541)||(17168912-17168945)
chr6 (518-559)||(13815057-13815098)
chr6 (499-539)||(9617454-9617494)
[»] chr7 (2 HSPs)
chr7 (499-539)||(19930940-19930980)
chr7 (505-541)||(30606069-30606105)
[»] chr4 (3 HSPs)
chr4 (504-548)||(32915610-32915654)
chr4 (504-548)||(5555136-5555180)
chr4 (504-544)||(25390890-25390930)
[»] chr8 (2 HSPs)
chr8 (501-548)||(14692470-14692517)
chr8 (504-544)||(18964192-18964232)
[»] chr3 (2 HSPs)
chr3 (506-558)||(41319316-41319369)
chr3 (504-544)||(35222953-35222993)
[»] scaffold0123 (1 HSPs)
scaffold0123 (499-539)||(44524-44564)


Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 660
Target Start/End: Complemental strand, 5400481 - 5399818
Alignment:
Q  1 gggataaatatttgttcttagattccatgttttagagaattactcatcagtagcaattatgcgatcaaaactgccacgattatgagaggacaataaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5400481 gggataaatatttgttcttagattccatgttttagagaattactcatcagtagcaattatgcgatcaaaactgccacgattatgagaggacaataaattt 5400382  T
Q  101 tacttacattgtatgtcaatcatgatggcatggataatgaaaatcataaaaatccaaaaacattttcatatcttttttagaacatgaaagaaacaaacaa 200  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5400381 tacttacattttatatcaatcatgatggcatggataatgaaaatcataaaaatccaaaaacattttcatatcttttttagaaaatgaaagaaacaaacaa 5400282  T
Q  201 cacactagtaattgtccaatgaccacatgtaaattttgcaaagccttttcactctgagtaacgctctgtttcatctgaaaaagtgttttaaagttcaact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5400281 cacactagtaattgtccaatgaccacatgtaaattttgcaaagccttttcactctgagtaacgctctgtttcatctgaaaaagtgttttaaagttcaact 5400182  T
Q  301 tttaaaatcccaacaaagtgtaacattcctttaatcccatcaaaatacgtgcaataacccatacactttctttattgtcgtagtaattgagttctagtag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5400181 tttaaaatcccaacaaagtgtaacattcctttaatcccatcaaaatacgtgcaataacccatacactttctttattgtcgttgtaattgagttctagtag 5400082  T
Q  401 tactactgtattgattgatcattaatagacatgtccatatacctaataaacacacgtactcttcggattatatgtgtctcagtatcatatacatatat-- 498  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||      
T  5400081 tactactgtattgattgatcattaatcgacatgtccatatacctaataaacacacgtactcttcagattagatgtgtctcagtatcatatatatatatat 5399982  T
Q  499 --acgataccgacacatatagttacattgaattatgtcattttttaaattatcattgatgtcagacatatatatgtcgtgtcttgtgtccgtatccgaat 596  Q
      ||||||| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  5399981 acacgatactgaaacatataattacattgaattatgtcattttttaaattattattgatgtcagacatatatatgtcgtgtcttgtgtccgtatccgagt 5399882  T
Q  597 ctgtgattgatggtatatatatagcttactatgtatctcttttttcaggaacgtttcatctcac 660  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5399881 ttgtgattgatggtatatatatagcttactatgtatctcttttttcaggaacgtttcatatcac 5399818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 541
Target Start/End: Original strand, 38749571 - 38749604
Alignment:
Q  508 acacatatagttacattgaattatgtcatttttt 541  Q
    ||||||||| ||||||||||||||||||||||||    
T  38749571 acacatataattacattgaattatgtcatttttt 38749604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 14818307 - 14818351
Alignment:
Q  504 accgacacatatagttacattgaattatgtcattttttaaattat 548  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||    
T  14818307 accgacacatatgtttacattgaattatgtcatttctcaaattat 14818351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 101052 - 101015
Alignment:
Q  507 gacacatatagttacattgaattatgtcattttttaaa 544  Q
    |||||||||| |||||||||||||||||||||||||||    
T  101052 gacacatataattacattgaattatgtcattttttaaa 101015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 541
Target Start/End: Complemental strand, 17168945 - 17168912
Alignment:
Q  508 acacatatagttacattgaattatgtcatttttt 541  Q
    ||||||||||||||||||||||||||||||||||    
T  17168945 acacatatagttacattgaattatgtcatttttt 17168912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 559
Target Start/End: Original strand, 13815057 - 13815098
Alignment:
Q  518 ttacattgaattatgtcattttttaaattatcattgatgtca 559  Q
    ||||||| ||||||||||||||||||||||| |||| |||||    
T  13815057 ttacattcaattatgtcattttttaaattattattggtgtca 13815098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 9617494 - 9617454
Alignment:
Q  499 acgataccgacacatatagttacattgaattatgtcatttt 539  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  9617494 acgacaccgacacatataattacattgaattatgtgatttt 9617454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 19930940 - 19930980
Alignment:
Q  499 acgataccgacacatatagttacattgaattatgtcatttt 539  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  19930940 acgatatcgacacatataattacattgaattatgtcatttt 19930980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 541
Target Start/End: Original strand, 30606069 - 30606105
Alignment:
Q  505 ccgacacatatagttacattgaattatgtcatttttt 541  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30606069 ccgacacatatggttacattgaattatgtcatttttt 30606105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 32915610 - 32915654
Alignment:
Q  504 accgacacatatagttacattgaattatgtcattttttaaattat 548  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||    
T  32915610 accgaaacatataattacattgaattatgtgattttttaaattat 32915654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 5555136 - 5555180
Alignment:
Q  504 accgacacatatagttacattgaattatgtcattttttaaattat 548  Q
    ||||||||||||| ||||||| |||||| | ||||||||||||||    
T  5555136 accgacacatataattacattaaattatcttattttttaaattat 5555180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 544
Target Start/End: Original strand, 25390890 - 25390930
Alignment:
Q  504 accgacacatatagttacattgaattatgtcattttttaaa 544  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  25390890 accgacacatatggttatattgaattatgtcattttctaaa 25390930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 548
Target Start/End: Complemental strand, 14692517 - 14692470
Alignment:
Q  501 gataccgacacatatagttacattgaattatgtcattttttaaattat 548  Q
    ||||||||||| |||||||||| ||||||||||||||| | |||||||    
T  14692517 gataccgacacctatagttacactgaattatgtcatttctcaaattat 14692470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 544
Target Start/End: Complemental strand, 18964232 - 18964192
Alignment:
Q  504 accgacacatatagttacattgaattatgtcattttttaaa 544  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  18964232 accgacacatataattacattgaattatgtgattttctaaa 18964192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 558
Target Start/End: Original strand, 41319316 - 41319369
Alignment:
Q  506 cgacacatatagttacattgaattatgtcatttttt-aaattatcattgatgtc 558  Q
    ||||||||| | |||||||||||||||||||||||| ||||||| |||| ||||    
T  41319316 cgacacatacaattacattgaattatgtcattttttcaaattattattggtgtc 41319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 544
Target Start/End: Complemental strand, 35222993 - 35222953
Alignment:
Q  504 accgacacatatagttacattgaattatgtcattttttaaa 544  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  35222993 accgacacatataattacattgaattatgtgattttctaaa 35222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 44524 - 44564
Alignment:
Q  499 acgataccgacacatatagttacattgaattatgtcatttt 539  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  44524 acgataccgacacatataattacactgaattatgtgatttt 44564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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