View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_32 (Length: 288)
Name: NF18664_low_32
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 28105844 - 28106114
Alignment:
| Q |
1 |
cttcgtcatcttcggattgacaagtgaactattgtaggaaaataatacacacaaggatgtatctagcgtagactaaaatccaactcagcatagtcaagtg |
100 |
Q |
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| T |
28105844 |
cttcgtcatcttcggattgacaagtgaactattgtaggaaaataatacacacaaggatgtatctagcgtagactaaaatccaactcagcatagtcaagtg |
28105943 |
T |
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| Q |
101 |
caagatattcataataagatttaagacatgtgcagttgttgaagtcacaattgcactgcataccattgtgttcggattcggattcggattcagccaacac |
200 |
Q |
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| T |
28105944 |
caagatattcataataagatttaagacatgtgcagttgttgaagtcacaattgcactgcataccattgtgttcggattcggattcggattcatccaacgc |
28106043 |
T |
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| Q |
201 |
gagttcatttacttttttcatgttttccaccatttgttcaaaagtgagatgagagttcatgtaagtcaagt |
271 |
Q |
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| T |
28106044 |
gagttcatttacttttttcatgttttccaccatttgttcaaaagtgagatgagagttcatgtaactcaagt |
28106114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 28087749 - 28087467
Alignment:
| Q |
1 |
cttcgtcatcttcggattgacaagtgaactattgtaggaaaataatacacacaaggatgtatctagcgtagactaaaatccaactca------------g |
88 |
Q |
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| T |
28087749 |
cttcgtcatcttcggattgacaagtgaactattgtaggaaaataatacacacaaggatgtatctagcgtaccctaaaatccaactcatcagcatagtcgg |
28087650 |
T |
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| Q |
89 |
catagtcaagtgcaagatattcataataagatttaagacatgtgcagttgttgaagtcacaattgcactgcataccattgtgttcggattcggattcgga |
188 |
Q |
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| T |
28087649 |
catagtcatgtgcaagatattcacgataagatttaagacatgtgcagttgttgaagtcacaattgcactgcataccattgtcatcggattcggattcaga |
28087550 |
T |
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| Q |
189 |
ttcagccaacacgagttcatttacttttttcatgttttccaccatttgttcaaaagtgagatgagagttcatgtaagtcaagt |
271 |
Q |
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| T |
28087549 |
ttcagccaacatgcgttcatctaattttttcaagttttccaacatttgttcataagtgagatgagagttcatgtaactcaagt |
28087467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 28105682 - 28105848
Alignment:
| Q |
18 |
tgacaagtgaactattgtaggaaaataatacacacaaggatgtatctagcgt--agact--------aaaatccaactcagcatagtcaagtgcaagata |
107 |
Q |
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| T |
28105682 |
tgacaagtgaacgattgtaggaaaataatacacacaaggatgtgtctagtctctagacttgaaatgcaaaatcctcatcatcatagtcatgttcaagata |
28105781 |
T |
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| Q |
108 |
ttcataataagatttaagacatgtgcagttgttgaagtcacaattgcactgcataccattgtgttcg |
174 |
Q |
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| T |
28105782 |
ttcgcaataagattgaagacatgtgcagttgttgaagtcacaattgcactgcataccattgtcttcg |
28105848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 28087888 - 28087745
Alignment:
| Q |
39 |
aaaataatacacacaaggatgtatctagcgtagact--------aaaatccaactcagcatagtcaagtgcaagatattcataataagatttaagacatg |
130 |
Q |
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| T |
28087888 |
aaaataatacacacaaggatgtatttagtctagacttgaaatgcaaaatcctcatcatcatagtcatgttcaagatattcgcaataagattgaagacata |
28087789 |
T |
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| Q |
131 |
tgcagttgttgaagtcacaattgcactgcataccattgtgttcg |
174 |
Q |
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| T |
28087788 |
tgcagttgttgaagtcacaattgcactgcataccattgtcttcg |
28087745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 28103128 - 28103179
Alignment:
| Q |
114 |
ataagatttaagacatgtgcagttgttgaagtcacaattgcactgcatacca |
165 |
Q |
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| T |
28103128 |
ataagattcaagaaacatgcacttgttgaagtcacaattgcactgcatacca |
28103179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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