View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_33 (Length: 287)
Name: NF18664_low_33
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 35444379 - 35444557
Alignment:
| Q |
19 |
gtgaacttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgcgaag |
118 |
Q |
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| T |
35444379 |
gtgaacttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgtgaag |
35444478 |
T |
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| Q |
119 |
taaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgcattaccatgttattcaata |
197 |
Q |
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| T |
35444479 |
taaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgcattactatgttatttaata |
35444557 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 35445668 - 35445746
Alignment:
| Q |
189 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
267 |
Q |
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| T |
35445668 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
35445746 |
T |
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