View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_34 (Length: 286)
Name: NF18664_low_34
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 45512519 - 45512258
Alignment:
| Q |
18 |
catagaatgggatcttc----atgataagattggtaagtctcattgcgaattaagaaattggacatacttattttttcatcaaacaattgcaggaaaaat |
113 |
Q |
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| T |
45512519 |
catagaatgggatcttcgatcatgataagattggtaagtctcattgcgaattaagaaattggacatacttatttcttcatcaaacaattgcaggaaaaat |
45512420 |
T |
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| Q |
114 |
ggaagtgatgttcatataaaaacaaatattgagaatggaagannnnnnngttgttcttcaaacggtg---attaaacggagttagtgtgaggggaggtca |
210 |
Q |
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| T |
45512419 |
ggaagtgctgttcatataaaaacaaatattgagaatggaaggtttttttgttgttcttcaaacggtgattattaaacggagttagtgtgaggggaggtca |
45512320 |
T |
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| Q |
211 |
aagtcttttgaaaaaatagaggggaggtgagtgacacttggttagaacttagggtggttagt |
272 |
Q |
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| T |
45512319 |
aagtcttttgaaaaaatagaggggaggtgagtgacacttggttagaacttagggtggttagt |
45512258 |
T |
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Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 35744272 - 35744023
Alignment:
| Q |
18 |
catagaatgggatcttcatgataagattggtaagtctcattgcgaattaagaaattggacatacttattttttcatcaaacaattgca--------ggaa |
109 |
Q |
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| T |
35744272 |
catagaatgggatcttcatgacaagattggtaagtctcattgcgaattaagaaaatggacat-cttatttcttcatcaagcaatggcacttcaaacggaa |
35744174 |
T |
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| Q |
110 |
aaatggaagtgatgttcatataaaaacaaat-attgagaatggaagannnnnnngttgttcttcaaacggtgattaaacggagttagtgtgaggggaggt |
208 |
Q |
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| T |
35744173 |
aaatggaagtgatgtttatgtaaaaaaaattgatcgagaatggaaggtttttcttttgttcttcaaagggtgattaaacagaggtagtgtgaggggaggt |
35744074 |
T |
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| Q |
209 |
caaagtcttttgaaaaaatagaggggaggtgagtgacacttggttagaact |
259 |
Q |
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| T |
35744073 |
caatgtctttttaaaaaatagaggggaggtgagtgatatttggttagaact |
35744023 |
T |
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