View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18664_low_38 (Length: 268)
Name: NF18664_low_38
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 24071337 - 24071572
Alignment:
| Q |
18 |
atttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagg |
117 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24071337 |
atttcttgacaaccatgcatgtaaaagttcacaacagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagg |
24071436 |
T |
|
| Q |
118 |
gcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24071437 |
gcaatgagacctttcacatcctcaccatgtgtttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtca |
24071536 |
T |
|
| Q |
218 |
ctatattactaactaaatactcgcagtaatatatat |
253 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| |
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| T |
24071537 |
ctacattactaactaaatactcccagtaatatatat |
24071572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 24079399 - 24079216
Alignment:
| Q |
18 |
atttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagg |
117 |
Q |
| |
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||||||||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24079399 |
atttcttgacaaccatgcatgtaaaagttcccaacagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagg |
24079300 |
T |
|
| Q |
118 |
gcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079299 |
gcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
24079216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 28567890 - 28568100
Alignment:
| Q |
19 |
tttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaaggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28567890 |
tttcttgacaaccatgcatgtagaagctcacagcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaaggg |
28567989 |
T |
|
| Q |
119 |
caatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28567990 |
caatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcat |
28568089 |
T |
|
| Q |
219 |
tatattactaa |
229 |
Q |
| |
|
| ||||||||| |
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|
| T |
28568090 |
tttattactaa |
28568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 28574735 - 28574928
Alignment:
| Q |
36 |
atgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcaca |
135 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
28574735 |
atgtagaagctcacggcagagatatcctacatcgttaagactatcttctccgtcaatacttagttgtgatgcttcgtaaagggcaatgaggcctttcaaa |
28574834 |
T |
|
| Q |
136 |
tcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28574835 |
tcctcaccatgtttttcttcaaacattcttttgttgcacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
28574928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 26315774 - 26315989
Alignment:
| Q |
21 |
tcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggca |
120 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| ||||| | |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26315774 |
tcttgacagccatccatgtagtagctcacgacaaacgtatcctaaatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagggca |
26315873 |
T |
|
| Q |
121 |
atgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaaca--attatagttagtcac |
218 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| |
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|
| T |
26315874 |
acgagacctttcacatcctcgccatgtttttcttcgaacattcttttgttacacttcaagctgtcaaataaatctgcaaaacaatattatagttagtcac |
26315973 |
T |
|
| Q |
219 |
tatattactaactaaa |
234 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
26315974 |
tatattactaactaaa |
26315989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 28585917 - 28586137
Alignment:
| Q |
19 |
tttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaaggg |
118 |
Q |
| |
|
|||||||| | |||| ||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
28585917 |
tttcttgatagccatccatgtagaagctcacggcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagag |
28586016 |
T |
|
| Q |
119 |
caatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcac |
218 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28586017 |
caataagacctttgacatcctcgccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttggtcac |
28586116 |
T |
|
| Q |
219 |
tatattactaactaaatactc |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28586117 |
tatattactaactaaatactc |
28586137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 28579770 - 28579990
Alignment:
| Q |
19 |
tttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaaggg |
118 |
Q |
| |
|
|||||||| | |||| ||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
28579770 |
tttcttgatagccatccatgtagaagctcacggcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagtg |
28579869 |
T |
|
| Q |
119 |
caatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcac |
218 |
Q |
| |
|
||| |||||||| || || || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28579870 |
taattagaccttttacttcttctccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttagtcac |
28579969 |
T |
|
| Q |
219 |
tatattactaactaaatactc |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28579970 |
tatattactaactaaatactc |
28579990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 20617093 - 20617254
Alignment:
| Q |
30 |
ccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacct |
129 |
Q |
| |
|
|||||| || ||||||||||||| ||| | |||| ||| || |||| |||||||||||||||||||||||| |||||||| || | ||||||||||||| |
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|
| T |
20617093 |
ccatgcttgaagaagctcacaactgaggtaccctaaatcattgagaccatcttctccttcaatacttagttgggatgcttcatacaaggcaatgagacct |
20617192 |
T |
|
| Q |
130 |
ttcacatcctcaccatgtttttct-tcaaacattcttttgttacacttcaagctgtcaaataa |
191 |
Q |
| |
|
|||||||||||||||| |||| || |||| ||| ||||| |||||||||||| ||||||||| |
|
|
| T |
20617193 |
ttcacatcctcaccatattttactctcaatgatt-ttttgctacacttcaagcagtcaaataa |
20617254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 2601542 - 2601425
Alignment:
| Q |
78 |
atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttc |
177 |
Q |
| |
|
||||||||| ||||||||||| || || ||||| || | |||||||||| ||||||||||||||| |||||| ||| |||| |||||| || || |
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|
| T |
2601542 |
atcttctccctcaatacttagctgggaggcttcatacatagcaatgagactcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatc |
2601443 |
T |
|
| Q |
178 |
aagctgtcaaataaatct |
195 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2601442 |
aagctgtcaaatatatct |
2601425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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