View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18664_low_39 (Length: 267)

Name: NF18664_low_39
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18664_low_39
NF18664_low_39
[»] chr1 (10 HSPs)
chr1 (148-223)||(43610554-43610629)
chr1 (148-182)||(2666107-2666141)
chr1 (148-187)||(37298167-37298206)
chr1 (148-182)||(11407222-11407256)
chr1 (148-182)||(29716760-29716794)
chr1 (148-182)||(31845051-31845085)
chr1 (148-182)||(43575737-43575771)
chr1 (148-182)||(46273590-46273624)
chr1 (148-182)||(51228227-51228261)
chr1 (142-182)||(32305493-32305533)
[»] chr3 (6 HSPs)
chr3 (148-182)||(9860466-9860500)
chr3 (148-182)||(9350058-9350092)
chr3 (148-182)||(21092075-21092109)
chr3 (148-182)||(27947687-27947721)
chr3 (148-180)||(5530540-5530572)
chr3 (148-176)||(39822704-39822732)
[»] chr2 (7 HSPs)
chr2 (148-182)||(1397012-1397046)
chr2 (143-182)||(37609920-37609959)
chr2 (148-182)||(19133332-19133366)
chr2 (148-182)||(28146013-28146047)
chr2 (148-182)||(30977092-30977126)
chr2 (148-182)||(35959931-35959965)
chr2 (148-182)||(42185724-42185758)
[»] chr7 (6 HSPs)
chr7 (144-180)||(39434876-39434912)
chr7 (148-182)||(10040354-10040388)
chr7 (148-182)||(25834501-25834535)
chr7 (148-182)||(32883074-32883108)
chr7 (182-215)||(16711973-16712006)
chr7 (182-215)||(17686209-17686242)
[»] chr8 (8 HSPs)
chr8 (151-182)||(34966647-34966678)
chr8 (148-182)||(444238-444272)
chr8 (148-182)||(13149875-13149909)
chr8 (148-182)||(18279457-18279491)
chr8 (148-182)||(18918413-18918447)
chr8 (148-182)||(36342508-36342542)
chr8 (141-182)||(11941533-11941574)
chr8 (148-181)||(36343034-36343067)
[»] chr6 (5 HSPs)
chr6 (148-182)||(2441369-2441403)
chr6 (148-182)||(13083651-13083685)
chr6 (148-182)||(24062561-24062595)
chr6 (148-182)||(26538312-26538346)
chr6 (144-182)||(28712078-28712116)
[»] chr5 (5 HSPs)
chr5 (148-182)||(248336-248370)
chr5 (144-182)||(33550484-33550522)
chr5 (148-182)||(38697091-38697125)
chr5 (148-180)||(831266-831298)
chr5 (144-184)||(6061923-6061963)
[»] chr4 (9 HSPs)
chr4 (144-182)||(9779272-9779310)
chr4 (148-182)||(20702300-20702334)
chr4 (148-182)||(27866263-27866297)
chr4 (148-182)||(38364948-38364982)
chr4 (148-182)||(39670115-39670149)
chr4 (149-182)||(18863090-18863123)
chr4 (153-182)||(41169118-41169147)
chr4 (148-180)||(4951531-4951563)
chr4 (148-180)||(18419254-18419286)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 43610554 - 43610629
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatactaaataaatttttctataataaagattgttggttgtatcatt 223  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||    
T  43610554 aaaagtgtaacaaattagatgaatatatttatactaaataattttttttataataaagatcgttggttgtgtcatt 43610629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 2666107 - 2666141
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||||||||||||||||    
T  2666107 aaaagtgtaacaaattagatgaatatatttatact 2666141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 37298206 - 37298167
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatactaaata 187  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  37298206 aaaagtgtaacaaactagatgaatatatttatacttaata 37298167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 11407222 - 11407256
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  11407222 aaaagtgtaacaaactagatgaatatatttatact 11407256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 29716794 - 29716760
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  29716794 aaaagtgtaacaaagtagatgaatatatttatact 29716760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 31845051 - 31845085
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  31845051 aaaagtgtaacaaattagatgagtatatttatact 31845085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 43575771 - 43575737
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  43575771 aaaagtgtaacaaactagatgaatatatttatact 43575737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 46273624 - 46273590
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  46273624 aaaagtgtaacaaactagatgaatatatttatact 46273590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 51228227 - 51228261
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  51228227 aaaagtgtaacaaattagatgagtatatttatact 51228261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 32305493 - 32305533
Alignment:
Q  142 tctttgaaaagtgtaacaaattagatgaatatatttatact 182  Q
    ||||| |||||||||||||| ||||||||||||| ||||||    
T  32305493 tcttttaaaagtgtaacaaactagatgaatatatctatact 32305533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 9860500 - 9860466
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||||||||||||||||    
T  9860500 aaaagtgtaacaaattagatgaatatatttatact 9860466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 9350058 - 9350092
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  9350058 aaaagtgtaacaaactagatgaatatatttatact 9350092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 21092109 - 21092075
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  21092109 aaaagtgtaacaaactagatgaatatatttatact 21092075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 27947687 - 27947721
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  27947687 aaaagtgtaacaaactagatgaatatatttatact 27947721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 5530540 - 5530572
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttata 180  Q
    |||||||||||||| ||||||||||||||||||    
T  5530540 aaaagtgtaacaaactagatgaatatatttata 5530572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 39822732 - 39822704
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatt 176  Q
    |||||||||||||||||||||||||||||    
T  39822732 aaaagtgtaacaaattagatgaatatatt 39822704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 1397012 - 1397046
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||||||||||||||||    
T  1397012 aaaagtgtaacaaattagatgaatatatttatact 1397046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 37609920 - 37609959
Alignment:
Q  143 ctttgaaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  37609920 ctttaaaaagtgtaacaaattagatgagtatatttatact 37609959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 19133332 - 19133366
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  19133332 aaaagtgtaacaaactagatgaatatatttatact 19133366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 28146013 - 28146047
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  28146013 aaaagtgtaacaaattagatgagtatatttatact 28146047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 30977126 - 30977092
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  30977126 aaaagtgtaacaaattagatgagtatatttatact 30977092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 35959931 - 35959965
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    ||||||||||||||||||| |||||||||||||||    
T  35959931 aaaagtgtaacaaattagaagaatatatttatact 35959965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 42185724 - 42185758
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  42185724 aaaagtgtaacaaactagatgaatatatttatact 42185758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 39434876 - 39434912
Alignment:
Q  144 tttgaaaagtgtaacaaattagatgaatatatttata 180  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39434876 tttgaaaagtgtaacaaactagatgaatatatttata 39434912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 10040354 - 10040388
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  10040354 aaaagtgtaacaaactagatgaatatatttatact 10040388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 25834501 - 25834535
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  25834501 aaaagtgtaacaaactagatgaatatatttatact 25834535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 32883074 - 32883108
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  32883074 aaaagtgtaacaaattagatgagtatatttatact 32883108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 16711973 - 16712006
Alignment:
Q  182 taaataaatttttctataataaagattgttggtt 215  Q
    |||| |||||||||||||||||||||||||||||    
T  16711973 taaacaaatttttctataataaagattgttggtt 16712006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 17686209 - 17686242
Alignment:
Q  182 taaataaatttttctataataaagattgttggtt 215  Q
    |||| |||||||||||||||||||||||||||||    
T  17686209 taaacaaatttttctataataaagattgttggtt 17686242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 34966647 - 34966678
Alignment:
Q  151 agtgtaacaaattagatgaatatatttatact 182  Q
    ||||||||||||||||||||||||||||||||    
T  34966647 agtgtaacaaattagatgaatatatttatact 34966678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 444238 - 444272
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    ||||||||||||||||| |||||||||||||||||    
T  444238 aaaagtgtaacaaattaaatgaatatatttatact 444272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 13149875 - 13149909
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  13149875 aaaagtgtaacaaattagatgagtatatttatact 13149909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 18279491 - 18279457
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||||| ||||||||||    
T  18279491 aaaagtgtaacaaattagatgaatgtatttatact 18279457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 18918447 - 18918413
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||| ||||||||||||||||||||||||||||||    
T  18918447 aaaaatgtaacaaattagatgaatatatttatact 18918413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 36342542 - 36342508
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  36342542 aaaagtgtaacaaactagatgaatatatttatact 36342508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 11941533 - 11941574
Alignment:
Q  141 ttctttgaaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||| |||||||||||||| ||||||| ||||||||||||    
T  11941533 ttctttaaaaagtgtaacaaactagatgagtatatttatact 11941574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 36343067 - 36343034
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatac 181  Q
    |||||||||||||| |||||||||||||||||||    
T  36343067 aaaagtgtaacaaactagatgaatatatttatac 36343034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 2441369 - 2441403
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  2441369 aaaagtgtaacaaactagatgaatatatttatact 2441403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 13083685 - 13083651
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||| ||||||||||||||||||||||||||||    
T  13083685 aaaagtataacaaattagatgaatatatttatact 13083651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 24062561 - 24062595
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  24062561 aaaagtgtaacaaactagatgaatatatttatact 24062595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 26538312 - 26538346
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  26538312 aaaagtgtaacaaactagatgaatatatttatact 26538346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 28712116 - 28712078
Alignment:
Q  144 tttgaaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  28712116 tttgaaaagtgtaacaaactagatgagtatatttatact 28712078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 248336 - 248370
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    ||||||||||||||||| |||||||||||||||||    
T  248336 aaaagtgtaacaaattatatgaatatatttatact 248370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 33550522 - 33550484
Alignment:
Q  144 tttgaaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  33550522 tttgaaaagtgtaacaaactagatgagtatatttatact 33550484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 38697125 - 38697091
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  38697125 aaaagtgtaacaaactagatgaatatatttatact 38697091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 831266 - 831298
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttata 180  Q
    |||||||||||||||||||| ||||||||||||    
T  831266 aaaagtgtaacaaattagataaatatatttata 831298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 6061923 - 6061963
Alignment:
Q  144 tttgaaaagtgtaacaaattagatgaatatatttatactaa 184  Q
    |||||||  ||||||||||||||||| ||||||||||||||    
T  6061923 tttgaaatatgtaacaaattagatgagtatatttatactaa 6061963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 9779310 - 9779272
Alignment:
Q  144 tttgaaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  9779310 tttgaaaagtgtaacaaaatagatgagtatatttatact 9779272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 20702300 - 20702334
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  20702300 aaaagtgtaacaaactagatgaatatatttatact 20702334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 27866297 - 27866263
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||||||||||| ||||||||||||    
T  27866297 aaaagtgtaacaaattagatgagtatatttatact 27866263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 38364982 - 38364948
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  38364982 aaaagtgtaacaaactagatgaatatatttatact 38364948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 39670115 - 39670149
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttatact 182  Q
    ||||||||||||||||||||||||| |||||||||    
T  39670115 aaaagtgtaacaaattagatgaatacatttatact 39670149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 18863090 - 18863123
Alignment:
Q  149 aaagtgtaacaaattagatgaatatatttatact 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  18863090 aaagtgtaacaaattagatgagtatatttatact 18863123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 41169118 - 41169147
Alignment:
Q  153 tgtaacaaattagatgaatatatttatact 182  Q
    ||||||||||||||||||||||||||||||    
T  41169118 tgtaacaaattagatgaatatatttatact 41169147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 4951531 - 4951563
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttata 180  Q
    |||||||||||||||||||| ||||||||||||    
T  4951531 aaaagtgtaacaaattagataaatatatttata 4951563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 18419254 - 18419286
Alignment:
Q  148 aaaagtgtaacaaattagatgaatatatttata 180  Q
    |||||||||||||||||||||| ||||||||||    
T  18419254 aaaagtgtaacaaattagatgagtatatttata 18419286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University