View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_42 (Length: 251)
Name: NF18664_low_42
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 52098036 - 52098268
Alignment:
| Q |
1 |
atggcacaagttgaaatgagattctggccaaatccgtggaagaagcccgcgatatcgaaatgatctaagtttagaagttctaagatgaagagacttcaac |
100 |
Q |
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| T |
52098036 |
atggcacaagttgaaatgagattctggccaaatccgtggaagaagcccgcgatatcgaaatgatttaagtttagaagttctaagatgaagagacttcaac |
52098135 |
T |
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| Q |
101 |
tgcaagcaatccaagattgttaacttgtgaagctttgattcagattcaatgaacaaagattgtaatccacaacaatcggtgatcgttaaattctcaagat |
200 |
Q |
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| T |
52098136 |
tgcaagcaatccaagattgttaacttgtgaagctttgattcagattcaatgaacaaagattgtaatccacaacaatcggtgatcgttaaattctcaagat |
52098235 |
T |
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| Q |
201 |
gatccaaattcgaaacgatcgaagaagctacct |
233 |
Q |
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| T |
52098236 |
gatccaaattcgaaacgatcgaagaagctacct |
52098268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 52090945 - 52091173
Alignment:
| Q |
5 |
cacaagttgaaatgagattctggccaaatccgtggaagaagcccgcgatatcgaaatgatctaagtttagaagttctaagatgaagagacttcaactgca |
104 |
Q |
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| T |
52090945 |
cacaagttgaaatgagatcctggccaaatccgaggaagaggtccgcgataacgaaaagatttaagtttagaagtgctaagatgaagagacttcaattgca |
52091044 |
T |
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| Q |
105 |
agcaatccaagattgttaacttgtgaagctttgattcagattcaatgaacaaagattgtaatccacaacaatcggtgatcgttaaattctcaagatgatc |
204 |
Q |
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| T |
52091045 |
agcaatctaagattgttaacttgagaaactttgattcagattcaacgaacaaagattgcaatccacaacaatcagtgatcattaaattctcaagatgatc |
52091144 |
T |
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| Q |
205 |
caaattcgaaacgatcgaagaagctacct |
233 |
Q |
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| T |
52091145 |
caaattcgagacaattgaagaagttacct |
52091173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 7660073 - 7659949
Alignment:
| Q |
10 |
gttgaaatgagattctggccaaatccgtggaagaagcccgcgatatcgaaatgatctaagtttagaagttctaagatgaagagacttcaactgcaagcaa |
109 |
Q |
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| T |
7660073 |
gttgaaatgaaattcaggcaaaatccaaggaagaggtcctctaaattgaaatgatttgagtttagaagttttaaggtgaagatatttcaattgtaagcaa |
7659974 |
T |
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| Q |
110 |
tccaagattgttaacttgtgaagct |
134 |
Q |
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| T |
7659973 |
tccaagatagttaacttgtgaagct |
7659949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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