View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_43 (Length: 250)
Name: NF18664_low_43
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_43 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 52097694 - 52097931
Alignment:
| Q |
13 |
aaaatgactacaatgagcaatgaagcactgatacgttgacatttataataaattgagaaaataaaataattaaatgtaaccatgtgtttccgtgttcgac |
112 |
Q |
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| T |
52097694 |
aaaatgacaacaatgagcaatgaagcactgatacgttgacatttataataaattgagaaaataaaataattaaatgtaaccatgtgtgtccgtgttcgac |
52097793 |
T |
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| Q |
113 |
accgacacatgttcgacatcaggcatacattcaatttgaagtgtcagtgttagataaacaataagcgacatgtatgtatgataccagcaatagtataaga |
212 |
Q |
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| T |
52097794 |
attgacacatgttcgacatcaggcatacattcaatttgaagtgtcaatgttagataaacaataagcgacatatatgtatgataccagcaatagtataaga |
52097893 |
T |
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| Q |
213 |
tgggaaattattaagagcatacctcaaaagtccattca |
250 |
Q |
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| T |
52097894 |
tgggaaattattgagagcatacctcaaaagtccattca |
52097931 |
T |
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Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 151452 - 151414
Alignment:
| Q |
57 |
ataataaattgagaaaataaaataattaaatgtaaccat |
95 |
Q |
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| T |
151452 |
ataataatttgagaaaataaaataattaaatgtaaccat |
151414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33697200 - 33697155
Alignment:
| Q |
50 |
gacatttataataaattgagaaaataaaataattaaatgtaaccat |
95 |
Q |
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| T |
33697200 |
gacattgataataatttgagaaaataaaataattgaatataaccat |
33697155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 1527865 - 1527918
Alignment:
| Q |
38 |
cactgatacgttgacatttataataaattgagaaaataaaataattaaatgtaa |
91 |
Q |
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| T |
1527865 |
cactgatacgtcgacatttattataatttgagaaaataataaaattgaatgtaa |
1527918 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 39120435 - 39120395
Alignment:
| Q |
38 |
cactgatacgttgacatttataataaattgagaaaataaaa |
78 |
Q |
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| T |
39120435 |
cactgacacgttgacactaataataaattgagaaaataaaa |
39120395 |
T |
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