View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_44 (Length: 250)
Name: NF18664_low_44
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45303547 - 45303788
Alignment:
| Q |
1 |
agtggataaaagcgttttctctttctttgtatgtgtgaggtgaaatgaataagttgagttcatgggtcttgatgagttttgggtccataagtctagttgt |
100 |
Q |
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| T |
45303547 |
agtggataaaagcgttttctctttctttgtatgtgtgaggtgaaatgaataagttgagttcatgggtcttgatgagttttgggtccataagtctagttgt |
45303646 |
T |
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| Q |
101 |
tactgtggttgtggtggacatgctagctgtaggacaagaagaagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgt |
200 |
Q |
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| T |
45303647 |
tactgtggttgtggtggacatgctagctgtaggacaagaagaagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgt |
45303746 |
T |
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| Q |
201 |
aattctgcttcatcgaattggagccatccatctgcctttgct |
242 |
Q |
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| T |
45303747 |
aattctgcttcatcgaattggagccatccatctgcttttgct |
45303788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 45150590 - 45150682
Alignment:
| Q |
142 |
aagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattggagccatccatctg |
234 |
Q |
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| T |
45150590 |
aagttaacagcatcatatgccacatgacattcctttccataaagtttctttcttgctgtagttcagcttcatcaaattggagccgtctatctg |
45150682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 45150446 - 45150492
Alignment:
| Q |
80 |
tgggtccataagtctagttgttactgtggttgtggtggacatgctag |
126 |
Q |
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| T |
45150446 |
tgggtccattagtgtagttgttactgtggttgtgatggccatgctag |
45150492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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