View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18664_low_50 (Length: 243)
Name: NF18664_low_50
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_50 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 38454326 - 38454549
Alignment:
| Q |
16 |
atgctaagaatgaatataacagaaccatgcatacatgcatgcatgcatgctgtggttttgaaataaaaaacaaaatggtacgtactatgctagattatga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38454326 |
atgctaagaatgaatataacagaaccatgcatacatg----catgcatgcagtggttttgaaataaaaaacaaaatggtacgtactatcctagattatga |
38454421 |
T |
|
| Q |
116 |
ttctaagttctaacaagcaagggaagagagaagtatgggaaacatatgcagataattaataaaaaccaaaatcaatataaaccatcgtatgatgcctcta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38454422 |
ttctaagttctaacaagcaagggaagagagaagtatgggaaacatatgcagataattaataaaaaccaaaatcaatataaaccatcgtatgatgcctcta |
38454521 |
T |
|
| Q |
216 |
ccaacacagaagagcattaattaaaata |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38454522 |
ccaacacagaagagcattaattaaaata |
38454549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 44473989 - 44473959
Alignment:
| Q |
61 |
catgctgtggttttgaaataaaaaacaaaat |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44473989 |
catgctgtggttttgaaataaaaaacaaaat |
44473959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University