View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_6 (Length: 596)
Name: NF18664_low_6
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 34293310 - 34293873
Alignment:
| Q |
18 |
atagatttacataataaatttcttggttcaacaaagatcaccatcagcagtgatacataagagccatgaagtgaaaataccagctccatttgttgcttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293310 |
atagatttacataataaatttcttggttcaacaaagatcaccatcagcagtgatacataagagccatgaagtgaaaataccagctccatttgttgcttct |
34293409 |
T |
|
| Q |
118 |
ttttcatctaggggtccaaattcaggatctcaacatgttctcaaggtaccaatagttgctattttttctccactcaaccatttatttgttaataatacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293410 |
ttttcatctaggggtccaaattcaggatctcaacatgttctcaaggtaccaatagttgctattttttctccactcaaccatttatttgttaataatacaa |
34293509 |
T |
|
| Q |
218 |
gtaannnnnnngagtgaaattcattgcatttgtaacattagtggactatttttagcctctacactgttgaataatctcttggatgcagcctgatgtaaca |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293510 |
gtaatttctttgagtgaaattcattgcatttgtaacattagtggactatttttagcctctacactgttgaataatctcttggatgcagcctgatgtaaca |
34293609 |
T |
|
| Q |
318 |
gctcctggcattagcatcttggcatcatttacactcaggcactcaattactagtatagaaggggacactcaattttcagtatttacactaatgtctggca |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293610 |
gctcctggcattagcatcttggcatcatttacacttaggcactcaattactagtatagaaggggacactcaattttcagtatttacactaatgtctggca |
34293709 |
T |
|
| Q |
418 |
cttccatggcatgccctcacatttctggaatagcagcatatgtgaagtcatttcacccaaattggacccctgctgcaatcagatcagctataatgactac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293710 |
cttccatggcatgccctcacatttctggaatagcagcatatgtgaagtcatttcacccaaattggacccctgctgcaatcagatcagctataatgactac |
34293809 |
T |
|
| Q |
518 |
aggtgaaaaattaaaggcttcaatgtacttttgactctaaatatcatgattgtggtcaaaagtt |
581 |
Q |
| |
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| T |
34293810 |
aggtgaaaaattaaaggcttcaatgtacttttgactctaaatatcgtgattgtggtcaaaagtt |
34293873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 282 - 533
Target Start/End: Complemental strand, 12726679 - 12726428
Alignment:
| Q |
282 |
tgttgaataatctcttggatgcagcctgatgtaacagctcctggcattagcatcttggcatcatttacactcaggcactcaattactagtatagaagggg |
381 |
Q |
| |
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|||| |||||| ||||| ||||||||||| |||||||||||||||||| ||||||||| ||| |||||| | | ||||||| | || ||||||| | |
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| T |
12726679 |
tgttcaataatatcttgtatgcagcctgacataacagctcctggcattaacatcttggctgcatatacacttaagacatcaattagtggtttagaaggcg |
12726580 |
T |
|
| Q |
382 |
acactcaattttcagtatttacactaatgtctggcacttccatggcatgccctcacatttctggaatagcagcatatgtgaagtcatttcacccaaattg |
481 |
Q |
| |
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||||||||||||||| ||||||||| ||||| || || || ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
12726579 |
acactcaattttcagaatttacactgatgtccggtacatcaatgtcatgccctcatgtttctggagtagcagcatatgtgaagtcatttcacccagattg |
12726480 |
T |
|
| Q |
482 |
gacccctgctgcaatcagatcagctataatgactacaggtgaaaaattaaag |
533 |
Q |
| |
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||| ||||| |||||||||||||| ||||| || |||||||| ||||||||| |
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| T |
12726479 |
gactcctgccgcaatcagatcagcaataattaccacaggtgataaattaaag |
12726428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 12726899 - 12726766
Alignment:
| Q |
31 |
ataaatttcttggttcaacaaagatcaccatcagcagtgatacataagagccatgaagtgaaaataccagctccatttgttgcttctttttcatctaggg |
130 |
Q |
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|||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12726899 |
ataaatttcttg-ttcaacatagatcaccctcagcagtgatacataagagccaggaagtgaaaataccagctccatttgttgcttctttttcatctaggg |
12726801 |
T |
|
| Q |
131 |
gtccaaattcaggatctcaacatgttctcaaggta |
165 |
Q |
| |
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|||||||| |||||||||| | | ||||||||||| |
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| T |
12726800 |
gtccaaatccaggatctcagcgtattctcaaggta |
12726766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 299 - 502
Target Start/End: Original strand, 28521353 - 28521556
Alignment:
| Q |
299 |
gatgcagcctgatgtaacagctcctggcattagcatcttggcatcatttacactcaggcactcaattactagtatagaaggggacactcaattttcagta |
398 |
Q |
| |
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|||||||||||| | ||||||| |||||| |||||||||||| | ||| || ||| | ||| | ||| || | | |||||| || |||||||||| | |
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| T |
28521353 |
gatgcagcctgacattgcagctccaggcattgacatcttggcatcttatactcttaggaaatcactcactggtttggcaggggatacacaattttcagaa |
28521452 |
T |
|
| Q |
399 |
tttacactaatgtctggcacttccatggcatgccctcacatttctggaatagcagcatatgtgaagtcatttcacccaaattggacccctgctgcaatca |
498 |
Q |
| |
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||| || |||| || || |||||||||||||| ||||| | |||| ||||||||||||||||||||||||| || || ||||| ||||||||||||| |
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| T |
28521453 |
ttttcaataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaaatggactcctgctgcaatca |
28521552 |
T |
|
| Q |
499 |
gatc |
502 |
Q |
| |
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|||| |
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| T |
28521553 |
gatc |
28521556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 28521155 - 28521285
Alignment:
| Q |
34 |
aatttcttggttcaacaaagatcaccatcagcagtgatacataagagccatgaagtgaaaataccagctccatttgttgcttctttttcatctaggggtc |
133 |
Q |
| |
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||||||||| |||||| ||| |||||||||||||||||| | ||||||||||||| ||| | | |||||||||| |||| | || |||||||| || | |
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| T |
28521155 |
aatttcttg-ttcaaccaaggtcaccatcagcagtgatatacaagagccatgaagaaaaagtgctagctccatttactgctacattctcatctagaggac |
28521253 |
T |
|
| Q |
134 |
caaattcaggatctcaacatgttctcaaggta |
165 |
Q |
| |
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||||| ||||||| ||||| ||||||||||| |
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| T |
28521254 |
caaatccaggatccaaacatcttctcaaggta |
28521285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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