View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_low_7 (Length: 589)
Name: NF18664_low_7
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 38368124 - 38367546
Alignment:
| Q |
1 |
acaagcttagcagcaataaccaaccaatgcccgggagcctcatgtgggccgcgcaaaacctcacatgtctccacatatttaagcatcttagcagaacgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38368124 |
acaagcttagcagcaataaccaaccaatgcccgggagcatcatgtgggccgcgcaaaacctcacatgtctccacatatttaagcatcttagcagaacgaa |
38368025 |
T |
|
| Q |
101 |
caggcacaggtggaccatttggataaacaccagagtttagtgcagttgcagctgccgcagctgcctgttgggcctgtttctgtgtagcagtaacactttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38368024 |
caggcacaggtggaccatttggataaacaccagagtttagtgcagttgcagctgccgcagctgcctgttgggcctgtttctgtgtagcagtaacactttg |
38367925 |
T |
|
| Q |
201 |
ttgtgtgaatgaaaatgttgtgctcagatttgtgaagaaagtcgattttcttgaagcttctggtgcagcagcccattctgttttcctgatgctgcaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367924 |
ttgtgtgaatgaaaatgttgtgctcagatttgtgaagaaagtcgattttcttgaagcttctggtgcagcagcccattctgttttcctgatgctgcaattt |
38367825 |
T |
|
| Q |
301 |
ggtatgtgagtgaagagaaggcgcaggtgaagtacattcctaggccaattccctttgctgatgagttgagcaccggttacgatataaaccccgcttgaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367824 |
ggtatgtgagtgaagagaaggcgcaggtgaagtacattcctaggccaattccctttgctgatgagttgagcaccggttacgatataaaccccgcttgaat |
38367725 |
T |
|
| Q |
401 |
ttgattcgtgcaaccagttggggtcatacttgaccactgaggtgcacacatgcgcgaatttcttccatcttattggttcggcaaactggttgctggattc |
500 |
Q |
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| T |
38367724 |
ttgattcgtgcaaccagttggggtcatacttgaccactgaggtgcacacatgcgcgaatttcttccatcttattggttcggcaaactggttgctggattc |
38367625 |
T |
|
| Q |
501 |
gtcctcatcggatcctcgccacatagttgtggtgcttgaagagagtgtcattgtatttgggaggcttgaaagatgatgt |
579 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367624 |
gtcctcatcggatcctcgccacatagtcgtggtgcttgaagagagtgtcattgtatttgggaggcttgaaagatgatgt |
38367546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 202 - 389
Target Start/End: Original strand, 34884550 - 34884737
Alignment:
| Q |
202 |
tgtgtgaatgaaaatgttgtgctcagatttgtgaagaaagtcgattttcttgaagcttctggtgcagcagcccattctgttttcctgatgctgcaatttg |
301 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| || |||| || | |||| || | ||||| | |
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| T |
34884550 |
tgtgtgaatgaaaatgttgtgctcaaatttgtgaagaaagatgattttcttgaggcctctggtgcggcgccccactccgacttccgtatagtacaattag |
34884649 |
T |
|
| Q |
302 |
gtatgtgagtgaagagaaggcgcaggtgaagtacattcctaggccaattccctttgctgatgagttgagcaccggttacgatataaac |
389 |
Q |
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||||||||| |||||||| ||||| ||||| ||||| || |||||| ||||| || | |||||||| ||||| ||||| || ||||| |
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| T |
34884650 |
ttatgtgagtaaagagaagacgcagatgaagcacatttcttggccaactccctctgataatgagttgtgcaccagttacaatgtaaac |
34884737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 34884367 - 34884514
Alignment:
| Q |
1 |
acaagcttagcagcaataaccaaccaatgcccgggagcctcatgtgggccgcgcaaaacctcacatgtctccacatatttaagcatcttagcagaacgaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||||| ||||| ||||| || ||||||||| |||||| || |||||||| | ||| || |||| |
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| T |
34884367 |
acaagcttagcagctgtaaccaaccaatggccaggagcatcatgagggccacgtaaaacctcagctgtctcgacgtatttaagtagtttactcgagcgaa |
34884466 |
T |
|
| Q |
101 |
caggcacaggtggaccatttggataaacaccagagtttagtgcagttg |
148 |
Q |
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|||||||||||||||| || ||||||| |||||||| |||||||||| |
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| T |
34884467 |
caggcacaggtggaccgttaggataaatgccagagttaagtgcagttg |
34884514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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