View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18664_low_8 (Length: 585)
Name: NF18664_low_8
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 575
Target Start/End: Complemental strand, 38369010 - 38368450
Alignment:
| Q |
15 |
caagattggcggttcgtctttgtcagcattagcaatcatcatcaggcatatttacttcctcggaaaagaaaacaacactttgtttgggaccaagannnnn |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38369010 |
caagattggcggttcgtctttgtcagcattagcaatcaccatcaggcatatttacttcctcggaaaagaaaacaacactttgtttgggaccaagattttt |
38368911 |
T |
|
| Q |
115 |
nnaattaaaaaactacacttattctcaacaaaaattgatattaaatgcctctcaacacactcagtcagtcacgcctagaactcgacatctagagcgactt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38368910 |
ttaattaaaaaactacacttattctcaacaaaaattgatattaaatgcctctcaacacactcagtcagtcacgcctagaactcgacatctagagcgactt |
38368811 |
T |
|
| Q |
215 |
gatagtggttagtccaacggattttaaatagactttgatataatcttaaaaccgacttataaagtgatggatgcttccacttatatacatacattttcaa |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
38368810 |
gatagttgttagtccaacggattttaaatagactttgatacaatcttaaaaccgacttataaagcgatggatgcttccacttatataaatacattttcaa |
38368711 |
T |
|
| Q |
315 |
accatattgaaaatctagagaacctttatatgtatcaatcatcaaatcaattgaaaaccatgtatctagattaatacagaagagtgaatcacatttgtaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38368710 |
accatattgaaaatctagagaacctttatatgtatcaatcatcaaatcaattgaaaaccatgtatctaaattaatacagaagagtgaatcacatttgtaa |
38368611 |
T |
|
| Q |
415 |
tcaatcaactggtaactgatgcattatatatggcaccaaaacaaacccattaaattggctataactaaactattgatatatcaaaacataatttatagct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38368610 |
tcaatcaactggtaactgatgcattatatatggcaccaaaacaaacccattaaattggctataactaaactattgatatatcaaaacataatttatagct |
38368511 |
T |
|
| Q |
515 |
atgttaaagtatagagattagtagttaattatttaaattatttgttgtatttagctgatga |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38368510 |
atgttaaagtatagagattagtagttaattatttaaattatttgttgtatttagctgatga |
38368450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University