View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18664_low_9 (Length: 568)
Name: NF18664_low_9
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 99 - 558
Target Start/End: Complemental strand, 2836654 - 2836202
Alignment:
| Q |
99 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaacccccattttaagtcttttagcaatgaat----tctacaattacaaag |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2836654 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaatccccattttaagtcttttagcaatgaatgaattctacaattacaaag |
2836555 |
T |
|
| Q |
195 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttaccttgcacaatctacatg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2836554 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttaccttgcacaatctacatg |
2836455 |
T |
|
| Q |
295 |
gtttgtacacattagaactagccttgtttaataccataaaaaatctttacaggaaaagtttttactaattaattctagagattgtaatcattcatacaag |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2836454 |
gtttgtacacattagaactagccttgtttaataccataaaaaatctttacaggaaaagtttgtactaattaattctagagattgtaatcattcatacaag |
2836355 |
T |
|
| Q |
395 |
taaaagtgtagggaacaaatgtttaaaattgttcaatcgcaaaggtcatatatgagaaactaattgaaccagttttaaacatttcagtttctcttctctg |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2836354 |
taaaagtgtagggaacaaatgtttaaaattgttcaatcgcaaaggtc-----------actaattgaaccagttttaaacatttcagtttctcttctctg |
2836266 |
T |
|
| Q |
495 |
acctgtatgatcgaacaatttagaatggatatttgtgtatgtttagaatgaatctttgcctatg |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2836265 |
acctgtatgatcgaacaatttagaatggatattggtgtatgtttagaatgaatctttgcctatg |
2836202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 2836826 - 2836741
Alignment:
| Q |
18 |
agaaaaaggtaacaaaaattgaacaaatatccgatgattcttgcacatcaggagagaatgagttcttttatgtgaaattcttttaa |
103 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2836826 |
agaaaaaggtaacaaaaattgaacatatatccgatgattcttgcacatcaagagagaatgagttcttttaagtgaaattcttttaa |
2836741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University