View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18665_high_12 (Length: 356)
Name: NF18665_high_12
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 31363335 - 31363425
Alignment:
| Q |
184 |
ctatggagttatctgaaaactccctaaaaacttcaatttaattaaatgtaatatatcaccatattttaagttaaaaaatccgaaagagaga |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31363335 |
ctatagagttatctgaaaactccctaaaaacttcaattcaattaaatgtaatatatcaccatattttaagttagaaaatccgaaagagaga |
31363425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 22984032 - 22984080
Alignment:
| Q |
232 |
taatatatcaccatattttaagttaaaaaatccgaaagagagatcaaaac |
281 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
22984032 |
taatatatcaccat-ttttaagttaaaaaatcttaaagagagatcaaaac |
22984080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University