View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_high_14 (Length: 354)
Name: NF18665_high_14
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_high_14 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 28188 - 28514
Alignment:
| Q |
9 |
agtagcatagggtagcatggttatttccctctttctgttgtgttgacttagcaagttggttagaagttagttagatagcttagtttgaattttttaaatt |
108 |
Q |
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| T |
28188 |
agtagtatagagtagcatggttatt-ccctctttctgttgtgttgacttagcaagttggttagaagttagttagatagcttagtttgagttttttaaatt |
28286 |
T |
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| Q |
109 |
caagagagaaatataactccccgtgttcaattgcttcataagtttaggaaaatattttcccttgnnnnnnnnnnnttaggaaaatattttatgtacaccc |
208 |
Q |
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| T |
28287 |
caagagagaaatataactccccgtgttcaattgcttcataagtttaggaaaatattttcccttg-aaaaaaaaatttaggaaaatattttatacacaccc |
28385 |
T |
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| Q |
209 |
ttaaaagtctgtacactttaaaacatagagacagaaatagagtgatttatagatgtgatagtttgatgatatgatagaaggagagacattgagagaaaat |
308 |
Q |
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| T |
28386 |
ttaaaagtttgtacactttaaaacatagagacagaaatagagtgatttatagatgtgatagtttgatgatatgatagaaggagagagattgagagaaaat |
28485 |
T |
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| Q |
309 |
gaacagctgattgtgtgtaagtttaatat |
337 |
Q |
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| T |
28486 |
gaactgttgattgtgtgtaagtttaatat |
28514 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 24257074 - 24257022
Alignment:
| Q |
243 |
aaatagagtgattt-atagatgtgatagtttgatgatatgatagaaggagaga |
294 |
Q |
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| T |
24257074 |
aaatagagtgatgtgatagatgtgataatttgatgatgtgatagaaagagaga |
24257022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 2822001 - 2821961
Alignment:
| Q |
257 |
atagatgtgatagtttgatgatatgatagaaggagagacat |
297 |
Q |
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| T |
2822001 |
atagatgtgatagattgatgatatgatataaagagagacat |
2821961 |
T |
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