View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18665_high_15 (Length: 337)
Name: NF18665_high_15
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 39726910 - 39727233
Alignment:
| Q |
1 |
agtcctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttgtttaaccagtctggtactgctagacttgtccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726910 |
agtcctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttgtttaaccagtctggtactgctagacttgtccatg |
39727009 |
T |
|
| Q |
101 |
cttggtatgctaccggtaatgtgtttaccggtggagcagccatgattaatgtttgcttagtttatatattgttactattacaattgcacactcaataaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727010 |
cttggtatgctaccggtaatgtgtttaccggtggagcagccatgattaatgtttgcttagtttatatattgttactattacaattgcacactcaataaat |
39727109 |
T |
|
| Q |
201 |
actctatgaacttggtttatatatacagagagctaagatacgtgtatacgtgactatgtgatgtaaaagagctaaaccaaagaaccgttgacctacaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727110 |
actctatgaacttggtttatatatacagagagctaagatacgtgtatacgtgaatatgtgatgtaaaagagctaaaccaaagaaccgttgacctacaaaa |
39727209 |
T |
|
| Q |
301 |
attgtttaaggtatcatttttata |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39727210 |
attgtttaaggtatcatttttata |
39727233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25671449 - 25671529
Alignment:
| Q |
1 |
agtcctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttgtttaaccagtctggt |
81 |
Q |
| |
|
||||||||||||||||| | ||||| || || |||| | |||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
25671449 |
agtcctggcatgctttgtaaaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaaccattctggt |
25671529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 5625660 - 5625726
Alignment:
| Q |
4 |
cctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttgttta |
70 |
Q |
| |
|
|||||||||||||| | ||||| ||||| | || | |||||||||||||||||||||||||||||| |
|
|
| T |
5625660 |
cctggcatgctttgtagaccaactagggttgatgctgtcatttgccatgagttgtctcctttgttta |
5625726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University