View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18665_high_21 (Length: 248)

Name: NF18665_high_21
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18665_high_21
NF18665_high_21
[»] chr8 (8 HSPs)
chr8 (55-232)||(23381415-23381592)
chr8 (55-232)||(23347627-23347807)
chr8 (138-192)||(15808883-15808940)
chr8 (138-192)||(17656616-17656673)
chr8 (138-192)||(23567484-23567541)
chr8 (130-194)||(1672912-1672979)
chr8 (138-194)||(35448599-35448658)
chr8 (138-189)||(185882-185936)
[»] scaffold0516 (1 HSPs)
scaffold0516 (130-194)||(1229-1296)
[»] scaffold0249 (1 HSPs)
scaffold0249 (130-194)||(23540-23607)
[»] chr7 (6 HSPs)
chr7 (130-194)||(5728861-5728928)
chr7 (138-192)||(44426596-44426653)
chr7 (130-188)||(46004343-46004404)
chr7 (130-191)||(44426780-44426844)
chr7 (138-194)||(7843515-7843574)
chr7 (130-194)||(32604717-32604784)
[»] chr4 (9 HSPs)
chr4 (130-194)||(8165758-8165825)
chr4 (138-192)||(25715716-25715773)
chr4 (138-192)||(54895402-54895459)
chr4 (130-191)||(36309598-36309662)
chr4 (130-191)||(53865224-53865288)
chr4 (138-188)||(53526253-53526306)
chr4 (138-194)||(33883290-33883349)
chr4 (130-189)||(25715644-25715706)
chr4 (130-189)||(54895564-54895626)
[»] chr6 (4 HSPs)
chr6 (138-192)||(22857666-22857723)
chr6 (130-191)||(10698576-10698640)
chr6 (130-194)||(21384785-21384852)
chr6 (130-194)||(25119102-25119169)
[»] chr5 (12 HSPs)
chr5 (130-194)||(15059614-15059682)
chr5 (138-192)||(20134388-20134445)
chr5 (130-194)||(20134195-20134262)
chr5 (130-190)||(39861579-39861642)
chr5 (130-192)||(16552245-16552310)
chr5 (130-188)||(22830769-22830830)
chr5 (138-192)||(39086515-39086572)
chr5 (138-192)||(39861769-39861826)
chr5 (130-194)||(3340760-3340827)
chr5 (138-190)||(11660971-11661026)
chr5 (130-194)||(22695521-22695588)
chr5 (131-194)||(39086688-39086754)
[»] chr3 (7 HSPs)
chr3 (138-194)||(8036796-8036855)
chr3 (130-194)||(19012543-19012610)
chr3 (138-194)||(50416476-50416535)
chr3 (138-192)||(36185894-36185951)
chr3 (138-192)||(50416553-50416610)
chr3 (130-191)||(36185725-36185789)
chr3 (166-199)||(11065425-11065458)
[»] chr1 (4 HSPs)
chr1 (130-189)||(17893073-17893135)
chr1 (138-192)||(32143758-32143815)
chr1 (138-191)||(42134122-42134178)
chr1 (130-187)||(45849111-45849171)
[»] chr2 (5 HSPs)
chr2 (138-192)||(31783791-31783848)
chr2 (138-192)||(42364490-42364547)
chr2 (138-191)||(30777294-30777350)
chr2 (138-194)||(12449050-12449109)
chr2 (130-194)||(15150272-15150339)
[»] scaffold0102 (1 HSPs)
scaffold0102 (130-194)||(15572-15639)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 23381592 - 23381415
Alignment:
Q  55 attctcctacgtaagaacatgcacatcattagatactttagcaccaaacaaatctatccaagatggtgagactttactcaccgaaaccatttctggattt 154  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  23381592 attctcctacctaagaacatgcacatcattagatactttagcaccaaacaaatctattcaagatggtgagactttactcaccgaaaccatttctgaattt 23381493  T
Q  155 attcagagtgcaggattttcttatgcaccataaccgcagcttttagtttcatcaaatggaacatttgaggttggtttc 232  Q
    |||||| |||||||||||||||||||||||||||||||   ||||||||||||| |||||| ||||||||||||||||    
T  23381492 attcagggtgcaggattttcttatgcaccataaccgcaatctttagtttcatcagatggaatatttgaggttggtttc 23381415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 55 - 232
Target Start/End: Original strand, 23347627 - 23347807
Alignment:
Q  55 attctcctacgtaagaacatgcacatcattagatactttagcaccaaacaaatctatccaagatggtgagactttactcaccgaaaccatttctggattt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  23347627 attctcctacgtaagaacatgcacatcattagatactttagcaccaaacaaatctatccaaaatggtgagactttactcacagaaaccatttctggattt 23347726  T
Q  155 attcagagtgc---aggattttcttatgcaccataaccgcagcttttagtttcatcaaatggaacatttgaggttggtttc 232  Q
    || ||| || |   ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  23347727 atgcagggttcataaggattttcttatgcaccataaccgcagcctttagtttcatcagatgtaacatttgaggttggtttc 23347807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 15808940 - 15808883
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  15808940 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 15808883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 17656673 - 17656616
Alignment:
Q  138 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||    
T  17656673 aaaccatttctggatttatgcagagtgcataaggatttccttatgcaccataaccgca 17656616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 23567541 - 23567484
Alignment:
Q  138 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||    
T  23567541 aaaccatttctggatttatgcagagtgcataaggatttccttatgcaccataaccgca 23567484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 1672912 - 1672979
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||| |||||    
T  1672912 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataacggcagc 1672979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 35448599 - 35448658
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  35448599 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 35448658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 185936 - 185882
Alignment:
Q  138 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataacc 189  Q
    |||||||||||| |||||| ||||||||   ||||||| ||||||||||||||||    
T  185936 aaaccatttctgaatttatgcagagtgcataaggatttccttatgcaccataacc 185882  T

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Target: scaffold0516 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 1229 - 1296
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| |||||||||||||||||||||    
T  1229 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 1296  T

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Target: scaffold0249 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 23607 - 23540
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  23607 actcacggaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 23540  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 5728861 - 5728928
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||| |||||   | ||||||||||||||||||||||||||    
T  5728861 actcacagaaaccatttctggatttatgcagggtgcataagaattttcttatgcaccataaccgcagc 5728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 44426653 - 44426596
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  44426653 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 44426596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 46004404 - 46004343
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataac 188  Q
    |||||| |||||||||||||||||||| ||||||||   |||||||  ||||||||||||||    
T  46004404 actcacagaaaccatttctggatttatgcagagtgcataaggatttcgttatgcaccataac 46004343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 44426780 - 44426844
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgc 191  Q
    |||||| |||||||||||||||||||| ||| ||||   | ||||| ||||||||||||||||||    
T  44426780 actcacagaaaccatttctggatttatgcagggtgcataaagatttccttatgcaccataaccgc 44426844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 7843574 - 7843515
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    ||||||||||||||||||| ||| |||||   |||||||||||  |||||||||||||||    
T  7843574 aaaccatttctggatttatgcagcgtgcataaggattttcttagacaccataaccgcagc 7843515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 32604784 - 32604717
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgcag---gattttcttatgcaccataaccgcagc 194  Q
    |||||| ||||||||||||| |||||| ||| |||||    |||||||||||||||||||| ||||||    
T  32604784 actcacagaaaccatttctgaatttatgcagggtgcataaagattttcttatgcaccataaacgcagc 32604717  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 8165825 - 8165758
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  8165825 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 8165758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 25715716 - 25715773
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  25715716 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 25715773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 54895459 - 54895402
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  54895459 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 54895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 36309598 - 36309662
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 191  Q
    |||||| |||||||||||| ||||||| ||| |||||   |||||||||||||||||||||||||    
T  36309598 actcacagaaaccatttctagatttatgcagggtgcataaggattttcttatgcaccataaccgc 36309662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 53865224 - 53865288
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgc 191  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||||||    
T  53865224 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgc 53865288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 53526306 - 53526253
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataac 188  Q
    ||||||||||||||||||| || ||||||   ||||||||||||||||||||||    
T  53526306 aaaccatttctggatttatgcaaagtgcataaggattttcttatgcaccataac 53526253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 33883349 - 33883290
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||||||||| |||||| ||| |||||   |||||| |||||||||||||||||||||    
T  33883349 aaaccatttctgaatttatacagggtgcataaggatttccttatgcaccataaccgcagc 33883290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 25715706 - 25715644
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataacc 189  Q
    |||||| |||||||||| ||||||||| ||| |||||   |||||| ||||||||||||||||    
T  25715706 actcacagaaaccatttttggatttatgcagggtgcataaggatttccttatgcaccataacc 25715644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 54895564 - 54895626
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataacc 189  Q
    |||||| |||||||||| ||||||||| ||| |||||   |||||| ||||||||||||||||    
T  54895564 actcacagaaaccatttttggatttatgcagggtgcataaggatttccttatgcaccataacc 54895626  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 22857666 - 22857723
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||    
T  22857666 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgca 22857723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 10698640 - 10698576
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 191  Q
    |||||| |||||||||||| ||||||| ||| |||||   |||||| ||||||||||||||||||    
T  10698640 actcacagaaaccatttcttgatttatgcagggtgcacaaggatttccttatgcaccataaccgc 10698576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 21384852 - 21384785
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| |||  |||   || |||| |||||||||||||||||||||    
T  21384852 actcacagaaaccatttctggatttatgcaggatgcataagaatttccttatgcaccataaccgcagc 21384785  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 25119169 - 25119102
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| ||||||||||||| |||||| ||| |||||   | |||| |||||||||||||||||||||    
T  25119169 actcacagaaaccatttctgaatttatgcagggtgcataagaatttccttatgcaccataaccgcagc 25119102  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 15059614 - 15059682
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca----ggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||| |||||    |||||| |||||||||||||||||||||    
T  15059614 actcacagaaaccatttctggatttatgcagggtgcataagggatttccttatgcaccataaccgcagc 15059682  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 20134388 - 20134445
Alignment:
Q  138 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||||||||||    
T  20134388 aaaccatttctggatttatgcagagtgcataaggatttccttatgcaccataaccgca 20134445  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 20134262 - 20134195
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| |||  ||||   |||||| |||||||||||||||||||||    
T  20134262 actcacagaaaccatttctggatttatgcaggctgcataaggatttccttatgcaccataaccgcagc 20134195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 39861642 - 39861579
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccg 190  Q
    ||||||||||||||||||||||||||| ||| ||||   ||||||| ||||||| |||||||||    
T  39861642 actcaccgaaaccatttctggatttatgcagggtgcataaggatttccttatgccccataaccg 39861579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 16552310 - 16552245
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    |||||| ||||||||||||| |||||| ||| |||||   |||||| |||||||||||||||||||    
T  16552310 actcacagaaaccatttctgaatttatgcagggtgcatacggatttccttatgcaccataaccgca 16552245  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 22830769 - 22830830
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataac 188  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| |||||||||||||||    
T  22830769 actcacagaaaccatttctggatttatgcagtgtgcataaggatttccttatgcaccataac 22830830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 39086572 - 39086515
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    |||||||||||| |||||| ||| |||||   ||||||||||||||||||||||||||    
T  39086572 aaaccatttctgaatttatgcagggtgcataaggattttcttatgcaccataaccgca 39086515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 39861769 - 39861826
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  39861769 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 39861826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 3340760 - 3340827
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||| ||||||||| || ||||||   |||||| |||| ||||||||||||||||    
T  3340760 actcacagaaaccatttatggatttatacatagtgcataaggatttccttacgcaccataaccgcagc 3340827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 11660971 - 11661026
Alignment:
Q  138 aaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccg 190  Q
    ||||||||||||||||||| ||| ||||   ||||||| |||||||||||||||||    
T  11660971 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 11661026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 22695521 - 22695588
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| ||||| |||||||||||||| ||  |||||   |||||| |||||||||||||||||||||    
T  22695521 actcacagaaactatttctggatttatgcaaggtgcataaggatttccttatgcaccataaccgcagc 22695588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 39086688 - 39086754
Alignment:
Q  131 ctcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    ||||| |||||||||||| ||||||| || ||||||   |||||| ||||||||||||||| |||||    
T  39086688 ctcacagaaaccatttctagatttatacatagtgcataaggatttccttatgcaccataactgcagc 39086754  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 8036855 - 8036796
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  8036855 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 8036796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 19012543 - 19012610
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||| ||||   || |||| |||||||||||||||||||||    
T  19012543 actcacagaaaccatttctggatttatgcagggtgcataagaatttccttatgcaccataaccgcagc 19012610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 50416535 - 50416476
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||||    
T  50416535 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgcagc 50416476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 36185894 - 36185951
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  36185894 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 36185951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 50416553 - 50416610
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  50416553 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 50416610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 36185789 - 36185725
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgc 191  Q
    |||||| |||||||||||||||||||| |||  |||   ||||||| ||||||||||||||||||    
T  36185789 actcacagaaaccatttctggatttatgcaggatgcataaggatttccttatgcaccataaccgc 36185725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 11065458 - 11065425
Alignment:
Q  166 aggattttcttatgcaccataaccgcagctttta 199  Q
    ||||||||||||||||||||||||||| ||||||    
T  11065458 aggattttcttatgcaccataaccgcacctttta 11065425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 17893135 - 17893073
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataacc 189  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||||    
T  17893135 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataacc 17893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 32143758 - 32143815
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||| ||||||| |||||||||   |||||| |||||||||||||||||||    
T  32143758 aaaccatttctagatttatgcagagtgcataaggatttccttatgcaccataaccgca 32143815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 42134122 - 42134178
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 191  Q
    ||||||||||||||||||| ||| |||||   |||||| ||||||||||||||||||    
T  42134122 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgc 42134178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 45849171 - 45849111
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataa 187  Q
    |||||| |||||||||||||||||||| ||| ||||   ||||||| ||||||||||||||    
T  45849171 actcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 45849111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 31783848 - 31783791
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    ||||||||||||||||||| ||| |||||   |||||| |||||||||||||||||||    
T  31783848 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccgca 31783791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 42364547 - 42364490
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgca 192  Q
    |||||||||||| |||||| ||| |||||   ||||||||||||||||||||||||||    
T  42364547 aaaccatttctgaatttatgcagggtgcataaggattttcttatgcaccataaccgca 42364490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 30777350 - 30777294
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgc 191  Q
    ||||||||||||||||||| ||| |||||   ||||||| |||||||||||||||||    
T  30777350 aaaccatttctggatttatgcagggtgcataaggatttttttatgcaccataaccgc 30777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 12449109 - 12449050
Alignment:
Q  138 aaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||||||||| |||||| ||| |||||   |||||| |||||||||||||||||||||    
T  12449109 aaaccatttctgaatttatgcagtgtgcataaggatttccttatgcaccataaccgcagc 12449050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 15150272 - 15150339
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgca---ggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||| |||||| |||||| |||  ||||   ||||||||||||||||||||||||||||    
T  15150272 actcacagaaaccttttctgaatttatgcaggatgcataaggattttcttatgcaccataaccgcagc 15150339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 15639 - 15572
Alignment:
Q  130 actcaccgaaaccatttctggatttattcagagtgc---aggattttcttatgcaccataaccgcagc 194  Q
    |||||| |||||||||||||||||||| ||||||||   || |  | |||||||||||||||||||||    
T  15639 actcacagaaaccatttctggatttatgcagagtgcataagaaaatccttatgcaccataaccgcagc 15572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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