View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_high_9 (Length: 383)
Name: NF18665_high_9
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 9832160 - 9832524
Alignment:
| Q |
1 |
tggcagaaaatggcatcacatattgttggatatcctcgcatgggccccaagagagagctcaagttcgcccttgaatcattctgggataagaagagcagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832160 |
tggcagaaaatggcatcacatattgttggatatcctcgcatgggccccaagagagagctcaagttcgcccttgaatcattctgggataagaagagcagcg |
9832259 |
T |
|
| Q |
101 |
ccgaggatttggagaaggtggctgctgacctcagggcatctatctggaaacagatgtccagtgccgggatcaagtatatccctagcaacactttcgcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832260 |
ccgaggatttggagaaggtggctgctgacctcagggcatctatctggaaacagatgtccagtgccgggatcaagtatatccctagcaacactttcgcata |
9832359 |
T |
|
| Q |
201 |
ctatgatcaggtgctcaataccaccgccatggttggtgcagttcccccaagatacggatggactggcggtgagattggattcgatacctacttctccatg |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832360 |
ctatgatcaggtgctcaataccaccgccatggtcggtgctgttcccccaagatacggatggactggcggtgagattggattcgatacctacttctccatg |
9832459 |
T |
|
| Q |
301 |
gccagaggtaatgcttctgtgcctgcaatggagatgaccaaatggttcgacaccaactagtaagt |
365 |
Q |
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| T |
9832460 |
gccagaggtaacgcttctgtgcctgcaatggagatgaccaagtggtttgacaccaactagtaagt |
9832524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 367
Target Start/End: Complemental strand, 33470491 - 33470131
Alignment:
| Q |
7 |
aaaatggcatcacatattgttggatatcctcgcatgggccccaagagagagctcaagttcgcccttgaatcattctgggataagaagagcagcgccgagg |
106 |
Q |
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|||||||| || || ||||||||||| ||||| ||||| |||||||||||| | || || || | |||||||||||||| || |||||||| ||||||| |
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| T |
33470491 |
aaaatggcttctcacattgttggataccctcgtatgggacccaagagagagttgaaatttgctttggaatcattctgggacaaaaagagcagtgccgagg |
33470392 |
T |
|
| Q |
107 |
atttggagaaggtggctgctgacctcagggcatctatctggaaacagatgtccagtgccgggatcaagtatatccctagcaacactttcgcatactatga |
206 |
Q |
| |
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||||| ||||||| ||||||| || || ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| | |||||||| |
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| T |
33470391 |
atttgaagaaggtttctgctgatctaagagcatccatctggaaacagatgtctgatgttgggatcaagtatatcccaagcaacacttttacttactatga |
33470292 |
T |
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| Q |
207 |
tcaggtgctcaataccaccgccatggttggtgcagttcccccaagatacggatggactggcggtgagattggattcgatacctacttctccatggccaga |
306 |
Q |
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||| || || |||| ||||||| | || || ||||| || || || ||||||||||| |||||||||||||||||||| ||||| || ||||| ||| |
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| T |
33470291 |
tcatgtacttgatactaccgccactctcggggccgttccacccaggtatggatggactggtggtgagattggattcgatacttacttttcaatggctaga |
33470192 |
T |
|
| Q |
307 |
ggtaatgcttctgtgcctgcaatggagatgaccaaatggttcgacaccaactagtaagtga |
367 |
Q |
| |
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|||||||| | || ||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
33470191 |
ggtaatgccaccgtccctgctatggagatgaccaagtggttcgacaccaactagtaagtga |
33470131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 35944957 - 35945308
Alignment:
| Q |
14 |
catcacatattgttggatatcctcgcatgggccccaagagagagctcaagttcgcccttgaatcattctgggataagaagagcagcgccgaggatttgga |
113 |
Q |
| |
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|||| ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| |||||| ||||| || || ||||| ||| | |
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| T |
35944957 |
catcccatattgttggttatccccgcatgggacccaagagggagcttaagtttgccctggaatcattttgggatggaaagagtagtgctgaggaattgaa |
35945056 |
T |
|
| Q |
114 |
gaaggtggctgctgacctcagggcatctatctggaaacagatgtccagtgccgggatcaagtatatccctagcaacactttcgcatactatgatcaggtg |
213 |
Q |
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| |||| |||||| |||| || || |||||||||| |||||| || ||| || || || |||| || |||||||| ||| ||||||||||||| || |
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| T |
35945057 |
gcaggttgctgctaaccttagatcagctatctggaagcagatggccgatgctggaattcagcatattccaagcaacaccttctcatactatgatcaagta |
35945156 |
T |
|
| Q |
214 |
ctcaataccaccgccatggttggtgcagttcccccaagatacggatggactggcggtgagattggattcgatacctacttctccatggccagaggtaatg |
313 |
Q |
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| | || || |||||| | ||||||||||| ||||| ||||| ||| || |||||||| || |||| |||||||||||||| ||||| |||| |
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| T |
35945157 |
ttggacacaacagccatgctcggtgcagttcctgacagatataaatggaatggtggggagattggttttgatatttacttctccatggcgagaggaaatg |
35945256 |
T |
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| Q |
314 |
cttctgtgcctgcaatggagatgaccaaatggttcgacaccaactagtaagt |
365 |
Q |
| |
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| |||||||| || ||||| |||||||| ||||| ||||||||||||||||| |
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| T |
35945257 |
catctgtgccagctatggaaatgaccaagtggtttgacaccaactagtaagt |
35945308 |
T |
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