View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_1 (Length: 625)
Name: NF18665_low_1
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 13 - 609
Target Start/End: Complemental strand, 28980541 - 28979948
Alignment:
| Q |
13 |
aaaatatagtataatctatgaatcagaacagaagtgattataccttgtaaatgctgtcgaatgaaaacaaccaacaacaaaagcgagaaaggaagaatct |
112 |
Q |
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| T |
28980541 |
aaaatatagtataatcgatgaatcagaacagaagtgattataccttgtaaatgctgtcgaatgaaaacaaccaacaacaaaagcgagaaaggaagaatct |
28980442 |
T |
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| Q |
113 |
gctcaatccacttggcaaccagctgaatatcatatctctggtaagaagacgaatccctgttattttctgttccattcccagcagcctcaccatcaacctg |
212 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28980441 |
gctcaatccacttagcaaccagctgaatatcatatctctggtaagaagacgaatccctgttattttctgttccattcccagcagcctcaccatcaacctg |
28980342 |
T |
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| Q |
213 |
cccactaccagccaacgacgaagaagaagatgaagacacaagaggaaccccttcactagcctcaattccaccacgaccctcggcatcattctcacccaat |
312 |
Q |
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| T |
28980341 |
cccactaccagccaacgacgaagaagaagatgaagacacaagaggaaccccttcactagcctcaattccaccacgaccctcggcatcattctcacccaat |
28980242 |
T |
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| Q |
313 |
ccaggcattccacttctctcagcaataagctcctcaccgcaatcatcataacccacttccccaacctgattatgaatattctctccagctccaataatcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28980241 |
ccaggcattccacttctctcagcaataagctcctcaccgcaatcatcataacccacttccccaacctgattatgaatattctctccagctccaataattc |
28980142 |
T |
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| Q |
413 |
ttattgcaacctcccctgcactactcccagcaacagcaccaccagcatcaacctgaggtcgtaactccgaaccagaaactccaccattgttgacaatcat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28980141 |
ttattgcaacctcccctgcactactcccagcaacagcaccaccagcatcaacctgaggtcgtaactccgaaccagaaact---ccattgttgacaatcat |
28980045 |
T |
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| Q |
513 |
accctcagaatcattacccgaacgcaaaattccagaataatccaacaaaaacgaaatcggtgacaaaaaggggttaacaggtaacctcattccatac |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28980044 |
accctcagaatcattacccgaacgcaaaattccagaataatccaacaaaaacgaaatcggtgacaaaaaggggttaacaggtaacctcattccatac |
28979948 |
T |
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