View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_10 (Length: 372)
Name: NF18665_low_10
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 11861238 - 11861584
Alignment:
| Q |
1 |
gaaggatacaatggattacactgctcctgaaatcaaaacttctaattcacaattgaaatccttctccaaattgaagtccatggtaattgagcgcatcgag |
100 |
Q |
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| T |
11861238 |
gaaggatacaatgaagtacgctgctcctgaaatcaaaacttctaattcacaattgaaacccttctccaaattgaagtccatggtagttgagcgcatcgac |
11861337 |
T |
|
| Q |
101 |
cattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattagagattgttttaatttaaagtctctgccacaaagtttcaagt |
200 |
Q |
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| T |
11861338 |
cattctccaccagaaagatggctcaaaaacttcatttcacttgaggaacttcacattagagattgttttaatttagcgtctctaccacaaggtttcaagt |
11861437 |
T |
|
| Q |
201 |
tattgagttcgcttcaatcactttctattgaaagatgtgaagaacttgatctttgcaattacaattttaaaactgaatgggagggtctgaaaaaacttcg |
300 |
Q |
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|||||||| || ||| |||| |||||||||||||| |||||||||||||| ||| ||| | || ||| ||||||||||||||||| ||||| |
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| T |
11861438 |
ctttgagttcactccaaacactcactattgaaagatgtcaagaacttgatcttgacaa--aca----tccaaatgagtgggagggtctgaaaaaccttcg |
11861531 |
T |
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| Q |
301 |
ttctcttacattaaggagtattccgaaacttaagtctcttccatggggagttg |
353 |
Q |
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| T |
11861532 |
ttctcttacattaaggagtattccaaaacttaagtcccttccatggggagttg |
11861584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 248
Target Start/End: Original strand, 11829171 - 11829359
Alignment:
| Q |
60 |
ccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattag |
159 |
Q |
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||||||| ||||||||||||||||||||||||||||| || || ||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
11829171 |
ccttctcgaaattgaagtccatggtaattgagcgcattgaccaatctccaccagagagttggcttaaaaacttcatttcacttgaggaacttcacattag |
11829270 |
T |
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| Q |
160 |
agattgttttaatttaaagtctctgccacaaagtttcaagttattgagttcgcttcaatcactttctattgaaagatgtgaagaacttg |
248 |
Q |
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| T |
11829271 |
agattgttttattttggagtctctaccacaaggtttcaagtttttaagctcactcatatcactttctattgaaagatgtgaacaacttg |
11829359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 343
Target Start/End: Complemental strand, 11901221 - 11900944
Alignment:
| Q |
60 |
ccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattag |
159 |
Q |
| |
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|||| ||||||||||| || |||||||||||||| || ||||| |||| ||||| | ||||| |||||||| |||| |||||| ||||||||||||| |
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| T |
11901221 |
ccttttccaaattgaaatcaatggtaattgagcgtattgagcaaactccaccagagaggtggcttaaaaactttgtttcgcttgaggaacttcacattag |
11901122 |
T |
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| Q |
160 |
agattgttttaatttaaagtctctgccacaaagtttcaagttattgagttcgcttcaatcactttctattgaaagatgtgaagaacttgatctttgcaat |
259 |
Q |
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| T |
11901121 |
agattgtgttattttaaagtctttaccacaaggtttcaagtctttgagttcactcatatcactcactattgagagatgtgaagaacttgatct------c |
11901028 |
T |
|
| Q |
260 |
tacaattttaaaactgaatgggagggtctgaaaaaacttcgttctcttacattaaggagtattccgaaacttaagtctcttcca |
343 |
Q |
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||| | |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| |||||| |
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| T |
11901027 |
gacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattcccaaactcaagtcccttcca |
11900944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 342
Target Start/End: Original strand, 12040072 - 12040368
Alignment:
| Q |
40 |
ttctaattcacaattgaaatccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttca |
139 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||| || || || ||||| || | | |||||| ||||||||||||||| |
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| T |
12040072 |
ttctaattcacaatcacaacccttctccaaattgaagtccatggtaattgagcgtattgaccaatctccaccgaagagatggcttaaaaacttcatttca |
12040171 |
T |
|
| Q |
140 |
cttgagaaacttcacattagagattgttttaatttaaagtctctgccacaaagtttcaagttattgagttcgcttcaatcactttctattgaaagatgtg |
239 |
Q |
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||| || ||||||||||| |||||||||| |||| |||||||| || || ||||| || |||||||| || || |||| |||||||||||||| |
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| T |
12040172 |
cttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaaacactcactattgaaagatgtc |
12040271 |
T |
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| Q |
240 |
aagaacttgatctttgcaattacaattttaaaactgaatgggagggtctgaaaaaacttcgttctcttacattaaggagtattccgaaacttaagtctct |
339 |
Q |
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| T |
12040272 |
aacaacttgatctt---gagtcc---tccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattccaaatctcaagtccct |
12040365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 11829404 - 11829485
Alignment:
| Q |
272 |
actgaatgggagggtctgaaaaaacttcgttctcttacattaaggagtattccgaaacttaagtctcttccatggggagttg |
353 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
11829404 |
actgaatgggagggtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttccatggggagttg |
11829485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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