View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18665_low_13 (Length: 354)

Name: NF18665_low_13
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18665_low_13
NF18665_low_13
[»] chr5 (11 HSPs)
chr5 (181-335)||(38986911-38987066)
chr5 (10-105)||(38986741-38986836)
chr5 (10-96)||(35336095-35336181)
chr5 (8-96)||(36340663-36340751)
chr5 (8-93)||(38366593-38366677)
chr5 (292-335)||(39725745-39725788)
chr5 (278-329)||(39879125-39879176)
chr5 (278-329)||(40411830-40411881)
chr5 (10-64)||(30619352-30619406)
chr5 (8-93)||(6660637-6660721)
chr5 (189-242)||(39874044-39874097)
[»] chr4 (6 HSPs)
chr4 (8-96)||(26939235-26939323)
chr4 (8-93)||(43702707-43702791)
chr4 (8-93)||(47476693-47476776)
chr4 (8-77)||(30843099-30843167)
chr4 (10-99)||(3425397-3425486)
chr4 (8-64)||(18542457-18542513)
[»] chr6 (1 HSPs)
chr6 (10-96)||(6941294-6941379)
[»] chr1 (2 HSPs)
chr1 (10-96)||(10887967-10888053)
chr1 (9-71)||(32295740-32295801)
[»] chr3 (4 HSPs)
chr3 (10-96)||(42724804-42724890)
chr3 (288-332)||(55345733-55345777)
chr3 (10-96)||(51898806-51898891)
chr3 (40-93)||(39349884-39349937)
[»] chr8 (2 HSPs)
chr8 (8-93)||(40521612-40521696)
chr8 (10-96)||(42279609-42279696)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 181 - 335
Target Start/End: Original strand, 38986911 - 38987066
Alignment:
Q  181 gagtatgatgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaataaatagatagaataaaaagtgag-ttcggcaattgctg 279  Q
    ||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38986911 gagtaagatgggccaaacccgcgattagaactgagaattttggccctaaaccataaataaataaatagatagaataaaaagtgagtttcggcaattgctg 38987010  T
Q  280 caattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttct 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987011 caattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttct 38987066  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 38986741 - 38986836
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataattcgtaccgg 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38986741 catcatcatccatcagggtggatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataattcgtaccgg 38986836  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 35336095 - 35336181
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataat 96  Q
    |||||||||||||||||||| |||||| | |||||| |||||||||||||||||| ||||||| ||||| |||||| ||||||||||    
T  35336095 catcatcatccatcagggtggatgaagtgccaaaatacacgaataaatccggaattaatattccggaatgggttcgaattatataat 35336181  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 36340663 - 36340751
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataat 96  Q
    |||||||||||||||||||||| || ||| | |||||| |||||||||||||||||| ||||||| ||||| | ||| |||||||||||    
T  36340663 gacatcatcatccatcagggtggatcaagtgccaaaatacacgaataaatccggaattaatattcgggaatggattcagattatataat 36340751  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 38366593 - 38366677
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatat 93  Q
    |||||| |||||||||||| ||| ||||| | ||||||||||||||||||||||||| ||||||||| || | |||||||||||||    
T  38366593 gacatcttcatccatcaggatga-tgaagtgccaaaatccacgaataaatccggaattaatattctgaaagtagttcggattatat 38366677  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 39725745 - 39725788
Alignment:
Q  292 aattaggtcaaaaagtggagaagatggagcaagggtggcgttct 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39725745 aattaggtcaaaaagtggagaagatggagcaagggtggcgttct 39725788  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 39879125 - 39879176
Alignment:
Q  278 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg 329  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  39879125 tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtgg 39879176  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 40411830 - 40411881
Alignment:
Q  278 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg 329  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  40411830 tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtgg 40411881  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 30619352 - 30619406
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaat 64  Q
    |||||||||||||||||||| |||||| | |||||| ||||||||||||||||||    
T  30619352 catcatcatccatcagggtggatgaagtgccaaaatacacgaataaatccggaat 30619406  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 6660637 - 6660721
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatat 93  Q
    |||||| |||||||||| ||||| ||||| | ||||||||||||||||||||| ||| |||||||  ||| | |||| ||||||||    
T  6660637 gacatcttcatccatcaaggtga-tgaagtgccaaaatccacgaataaatccgaaattaatattccagaagtagttcagattatat 6660721  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 39874044 - 39874097
Alignment:
Q  189 tgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaat 242  Q
    |||||||||||||| |||||||| ||||||| ||||||||||| | ||||||||    
T  39874044 tgggccaaacccgcgattagaactgaaaattctggccctaaacaacaaataaat 39874097  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 26939235 - 26939323
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataat 96  Q
    ||||||||||| |||||||||| |||||| | |||||| |||||||||||||||||| ||||||  ||||| |||||||||||||||||    
T  26939235 gacatcatcattcatcagggtggatgaagtgccaaaatacacgaataaatccggaattaatatttcggaatgggttcggattatataat 26939323  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 43702791 - 43702707
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatat 93  Q
    |||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||| ||||||| |||| | |||||||||||||    
T  43702791 gacatcttcatccatcagggtgatt-aagtgccaaaatccacgaataaatccggaattaatattccggaagtagttcggattatat 43702707  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 47476693 - 47476776
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatat 93  Q
    |||||| |||||| | ||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||    
T  47476693 gacatcttcatcctttagggtga-tgaagtgtcaaaatccacgaataaatccggaat-aatattccggaagtagttcggattatat 47476776  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 30843167 - 30843099
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaa 77  Q
    |||||| |||||||||||||||| ||||| | ||||||||||||||||||||| ||| ||||||| ||||    
T  30843167 gacatcttcatccatcagggtga-tgaagtgccaaaatccacgaataaatccgaaattaatattccggaa 30843099  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 3425486 - 3425397
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataattcg 99  Q
    ||||||||||||||| |||| |||||| | ||||| ||||||||||||||  ||  | || || |||| | |||||||||||||||||||    
T  3425486 catcatcatccatcatggtggatgaagtgccaaaaaccacgaataaatccaaaaatattactccggaactagttcggattatataattcg 3425397  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 18542513 - 18542457
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaat 64  Q
    |||| ||||||||||||| ||| ||||||   |||||| ||||||||||||||||||    
T  18542513 gacaccatcatccatcagagtggatgaagtaccaaaatacacgaataaatccggaat 18542457  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 6941294 - 6941379
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataat 96  Q
    ||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||  |||||| ||||| |||||||||||||||||    
T  6941294 catcatcatccatcagggtga-tgaagtgccaaaatccatgaataaatccggaattgatattccggaatgggttcggattatataat 6941379  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 10887967 - 10888053
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataat 96  Q
    ||||||||||||| || ||| |||||| | ||||||||||||||||||||||||| |||||||  |||| | |||||||||| ||||    
T  10887967 catcatcatccattagagtggatgaagtgccaaaatccacgaataaatccggaattaatattccagaatggtttcggattatgtaat 10888053  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 32295801 - 32295740
Alignment:
Q  9 acatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatatt 71  Q
    ||||| |||||||| ||||||| ||||| | |||||||||||||||||| |||||| ||||||    
T  32295801 acatcttcatccatgagggtga-tgaagtgccaaaatccacgaataaattcggaattaatatt 32295740  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 42724804 - 42724890
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataat 96  Q
    |||||||||||||||||||| |||||| | |||||| |||||||||||| ||| |  |||||| ||||| | | |||||||||||||    
T  42724804 catcatcatccatcagggtggatgaagtgccaaaatacacgaataaatctggattatatattccggaatggttccggattatataat 42724890  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 55345777 - 55345733
Alignment:
Q  288 aagaaattaggtcaaaaagtggagaagatggagcaagggtggcgt 332  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||    
T  55345777 aagaaattaggtcaaagagtggagaatatggaggaagggtggcgt 55345733  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 51898806 - 51898891
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatataat 96  Q
    |||||||||||||||||||| || ||| | |||||| ||||||||||| || ||| |||| ||  |||| |||| ||||||||||||    
T  51898806 catcatcatccatcagggtggataaagtgccaaaatacacgaataaattcgaaattaata-tcccgaatgggtttggattatataat 51898891  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 39349884 - 39349937
Alignment:
Q  40 caaaatccacgaataaatccggaatcaatattctggaattggttcggattatat 93  Q
    ||||||||||||||||||||| ||| ||||||| |||| | |||| ||||||||    
T  39349884 caaaatccacgaataaatccgaaattaatattccggaagtagttcagattatat 39349937  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 40521696 - 40521612
Alignment:
Q  8 gacatcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccggaatcaatattctggaattggttcggattatat 93  Q
    |||||| |||||||||| ||||| ||||| | ||||||||||||||||||  ||||| ||||||| |||| | |||||||||||||    
T  40521696 gacatcttcatccatcaaggtga-tgaagtgccaaaatccacgaataaatatggaattaatattccggaagtagttcggattatat 40521612  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 42279609 - 42279696
Alignment:
Q  10 catcatcatccatcagggtgaatgaagcgtcaaaatccacgaataaatccg-gaatcaatattctggaattggttcggattatataat 96  Q
    |||||||||||||||||||| |||| | | |||||| ||| ||||||||||  ||| |||||||  |||| ||||| |||||||||||    
T  42279609 catcatcatccatcagggtggatgatgtgccaaaatacactaataaatccgaaaattaatattccagaatgggttcagattatataat 42279696  T

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