View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_17 (Length: 315)
Name: NF18665_low_17
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 28649061 - 28649346
Alignment:
| Q |
8 |
agataattctaagtagatggtggctctagctataaggaaccgaaaaaattaatggaaataagggtattaacaaccaaagaatataatgttatcattgatt |
107 |
Q |
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| T |
28649061 |
agataattctaagtaggtggtggctctagctataagcaaccgaaaaaattaatggaaataaggatattaacaaccaaagaatat--tgttatcattgatt |
28649158 |
T |
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| Q |
108 |
agaagggctaatgcatgcttaatgttaaaagtaagagtataccaccaaatttgtttaggattttccacactttttcttatttgatatttcaagcaaacaa |
207 |
Q |
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| T |
28649159 |
agaatggttaatgcttgcttaatgttaaaagtaagagtataccaccaaatttgtctaggattttccacactttttcttatttggtctttcaagcaaacaa |
28649258 |
T |
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| Q |
208 |
aaataacatatagtttatgcctgttgagtatggctcataggcagtgtcaagggggcaaggggagaggtagaagagcgagcatagcgagt |
296 |
Q |
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| T |
28649259 |
aaataacatatagtttatgcttgttgagtatggctcataggcagtgtcaaggggacaa-gggagaggtagaagagcgagcgtagcgagt |
28649346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 44 - 296
Target Start/End: Original strand, 28639794 - 28640045
Alignment:
| Q |
44 |
gaaccgaaaaaattaatggaaataa--gggtattaacaaccaaagaatataatgttatcattgattagaagggctaatgcatgcttaatgttaaaagtaa |
141 |
Q |
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| T |
28639794 |
gaaccgaaaaaattaattgaaatatatggatattaacaaccaaagcatataatgccatcattgattagaaggggtaatgc----ttaatgtttaaagtaa |
28639889 |
T |
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| Q |
142 |
gagtataccaccaaatttgtttaggattttccacactttttcttatttgatatttcaagc-aaacaaaaataacatatagtttatgcctgttgagtatgg |
240 |
Q |
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| T |
28639890 |
gagtacaccaccaattttgtctaggattttacacactttttcttaattggtctttcaagcaaaaaaaaaataacatatggtctatgactattgagtatgg |
28639989 |
T |
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| Q |
241 |
ctcataggcagtgtcaagggggcaaggggagaggtagaagagcgagcatagcgagt |
296 |
Q |
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| T |
28639990 |
aacataggcagtgtcaagggagcaaggggcgagggagtagagcaagcgtaacgagt |
28640045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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