View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_18 (Length: 274)
Name: NF18665_low_18
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_18 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 23381908 - 23381649
Alignment:
| Q |
16 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacacaatcactctaacatcattcaacataaacc--caattgc-tctttgaaagat |
112 |
Q |
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| T |
23381908 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacacaatgacactaaca--attgttcttcaaccaacaatcaaatcattcaaacat |
23381811 |
T |
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| Q |
113 |
atatttctgattttattattttattacacagtcattccatttctgattgcatttgtcatatttgatatattgccaaaagtagcaatttaaaaacacgttg |
212 |
Q |
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| T |
23381810 |
atatttctgattttattattttagtacacagtcattccatttctgattgcatttgtcatatttgatatgttaccaaaagtagcaatttaaaaacacgttg |
23381711 |
T |
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| Q |
213 |
ctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacatatt |
274 |
Q |
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| T |
23381710 |
ctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacatatt |
23381649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 23347405 - 23347566
Alignment:
| Q |
111 |
atatatttctgattttattattttattacacagtcattccatttctgattgcatttgtcatatttgatatattgccaaaagtagcaatttaaaaacacgt |
210 |
Q |
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| T |
23347405 |
atatatttctgattttattattttagtacacagtcattccatttctgattgcatttgtcat--ttgatatattgccaaaagtagaaatttaaaaacacgt |
23347502 |
T |
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| Q |
211 |
tgctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacatatt |
274 |
Q |
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| T |
23347503 |
tgctttgaatatacatgtcacatgtgtgatagtaataatgtatattttcagaatcttacatatt |
23347566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 23345094 - 23345170
Alignment:
| Q |
16 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacacaatcactctaacatcattcaacataaac |
92 |
Q |
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| T |
23345094 |
atcagcataccaaatgaaaatggaaaattattcttctgacaattgacacaatgacactaacatcattcaacagaaac |
23345170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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