View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18665_low_2 (Length: 615)

Name: NF18665_low_2
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18665_low_2
NF18665_low_2
[»] chr7 (2 HSPs)
chr7 (1-605)||(38632088-38632691)
chr7 (48-332)||(38634871-38635170)
[»] chr1 (22 HSPs)
chr1 (25-221)||(35295600-35295796)
chr1 (37-221)||(35190609-35190793)
chr1 (37-230)||(35225180-35225373)
chr1 (37-220)||(45525734-45525917)
chr1 (37-220)||(45531844-45532027)
chr1 (91-221)||(35219391-35219521)
chr1 (48-148)||(35216208-35216308)
chr1 (37-221)||(35270682-35270866)
chr1 (37-215)||(35147595-35147773)
chr1 (1-214)||(19266457-19266670)
chr1 (37-221)||(35263257-35263441)
chr1 (91-230)||(8639228-8639367)
chr1 (94-221)||(35200235-35200362)
chr1 (90-220)||(35205244-35205373)
chr1 (94-220)||(35476641-35476767)
chr1 (34-149)||(35212230-35212345)
chr1 (90-208)||(34309696-34309814)
chr1 (37-221)||(35208373-35208559)
chr1 (91-165)||(35248588-35248662)
chr1 (49-221)||(35474177-35474347)
chr1 (101-147)||(35252398-35252444)
chr1 (105-214)||(19267480-19267591)
[»] chr3 (4 HSPs)
chr3 (91-216)||(899427-899552)
chr3 (90-216)||(19246719-19246845)
chr3 (105-216)||(23332100-23332211)
chr3 (101-178)||(53924083-53924160)


Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 38632088 - 38632691
Alignment:
Q  1 catatggatctaaacagccaacactagtaatattaaggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaa 100  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632088 catatggatccaaacagccaacgttagtaatattaaggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaa 38632187  T
Q  101 cttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38632188 cttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagctcagca 38632287  T
Q  201 acttcagggaacctgtccaaattttttgcaagataaaaatacaggaacttagcaaaaagttgaaagtaattcataagatcacaaatggatagtatttata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38632288 acttcagggaacctgtccaaattttttgcaagataaaaatacaggaacttagcaaaaagttaaaagtaattcataagatcacaaatggatagtatttata 38632387  T
Q  301 catgtgtgcttagtagttaaagccattgattggaaaatcattgatagagactccgctcataatcattaatgcatgcacaattaattataacaaactatgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632388 catgtgtgcttagtagttaaagccattgattggaaaatcattgatagagactccgctcataatcattaatgcatgcacaattaattataacaaactatgt 38632487  T
Q  401 ctatgaagtaatttaaatctttacttcgatttttcaatcaataacttggaaatgcaaggtaaggctgcctatttgagccttctttgcaagatcgaaacag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38632488 ctatgaagtaatttaaatctttacttcgatttttcaatcaataacttgaaaatgcaaggtaaggctgcctatttgagccttctttgcacgatcgaaacag 38632587  T
Q  501 atgtatccagtactctctcttgaatctttcatacattttgttgaaaaatatgatagcaaaagtcagttattttatcagacgagggaacagcatattcagc 600  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38632588 atgtatccagtactctctcttgaatctttcataca-tttgttgaaaaatatgatagcaaaagtcagttattttatcagacgaggaaacagcatattcagc 38632686  T
Q  601 ctttg 605  Q
    |||||    
T  38632687 ctttg 38632691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 48 - 332
Target Start/End: Original strand, 38634871 - 38635170
Alignment:
Q  48 acaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaa 147  Q
    |||||||||||||||  || | ||  |||||  |||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||  ||    
T  38634871 acaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctggaacacaagataagctacatactgagtatttcgggacaagtaaa 38634970  T
Q  148 gagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaatttt-----------ttgcaa----- 231  Q
    |||||| ||| |||||||||||||||||| ||||| ||| ||||| |||| ||||||||||||||||||||||| |||           ||||||         
T  38634971 gagtgtttattcttccacgaatttcaagcgaaaacgcattacgaatctcaacaacttcagggaacctgtccaaaatttgtgcacaaaagttgcaatgata 38635070  T
Q  232 -gataaaaatacaggaacttagcaaaaagttgaaagtaattcataagatcacaaatggatagtatttatacatgtgtgcttagtagttaaagccattgat 330  Q
     ||||  | |||| ||||| || |||||||||||||||||||||| ||||||||||||  ||| ||||||||||||| || |||||||||||||||| ||    
T  38635071 tgatatgattacaagaactgagaaaaaagttgaaagtaattcataggatcacaaatgg--agtgtttatacatgtgtactgagtagttaaagccattaat 38635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 35295796 - 35295600
Alignment:
Q  25 tagtaatattaaggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacata 124  Q
    |||||||| || ||||||||| |||||||||||||||||| ||||||   || |  |||||| | |||| ||||| ||||||||||||||||||| ||||    
T  35295796 tagtaatactatggccaccttcgacaccaactgataactcaacaggacaattttgaaatcctcgggcattaatcatcttgaacacaagataagctgcata 35295697  T
Q  125 ctgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 221  Q
     ||||||||| | ||||||||| | |||| |||| | ||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||||||    
T  35295696 ttgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaa 35295600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 35190609 - 35190793
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcg 136  Q
    ||||||||| |||||||||||||||||| | ||||  |||||  |||||||  |||||||||| ||||||||||||||||||  ||||||| |||||| |    
T  35190609 ggccaccttcgacaccaactgataactctataggacagttctgaaatccttcggcatcaatcatcttgaacacaagataagccgcatactgggtatttgg 35190708  T
Q  137 agacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 221  Q
     ||||||||||| || | |||| | |||||||| |||||| |  |||| ||| ||||||||||||||||||||||||||||||||    
T  35190709 ggacaaggcaagggtatttatcatcccacgaatatcaagccaccacacttcaagaagctcagcaacttcagggaacctgtccaaa 35190793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 35225180 - 35225373
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcg 136  Q
    ||||||||| || ||||||||||||||||||||||  || ||| ||||| |  ||||  |||| ||||||||||||||||| ||||||| |||||||| |    
T  35225180 ggccaccttcgataccaactgataactccacaggaaagtactcaaatccataggcattgatcatcttgaacacaagataagttacataccgagtatttgg 35225279  T
Q  137 agacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaattttttgca 230  Q
     ||||||||||| |||| || | | ||||||||||||||| || |||||| | |||| || ||||||||||| || ||||||||| ||| ||||    
T  35225280 ggacaaggcaagggtgtttaacttcccacgaatttcaagccaacacacatgaagaagttcggcaacttcaggaaatctgtccaaaatttgtgca 35225373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 45525734 - 45525917
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcg 136  Q
    ||||||||| |||||| || ||||| ||||||||| || |||| || || |   |||||||||| |||||||| ||||||||| |||||||||||||| |    
T  45525734 ggccaccttcgacaccgacagataaatccacaggaagggtctcaaacccatagccatcaatcaatttgaacacgagataagctgcatactgagtatttgg 45525833  T
Q  137 agacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaa 220  Q
    ||||||||||||| |||  ||| | ||||||||||| ||| |  |||||  |||||| | ||||||||| ||||||||||||||    
T  45525834 agacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacgaagattagcaacttcggggaacctgtccaa 45525917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 45531844 - 45532027
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcg 136  Q
    |||||||||||||||| || ||||| ||||||||| ||||||| || || |  | ||||||||  |||||||||||||||||| |||| ||||||||| |    
T  45531844 ggccacctttgacaccgacagataaatccacaggaaggttctcaaacccataggaatcaatcattttgaacacaagataagctgcatattgagtatttgg 45531943  T
Q  137 agacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaa 220  Q
     |||||||||||| |||  ||| | ||||||||||| ||| |  |||||  || ||| | ||||||||| ||||||||||||||    
T  45531944 ggacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacaaagtttagcaacttcggggaacctgtccaa 45532027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 35219391 - 35219521
Alignment:
Q  91 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 190  Q
    ||||||||| ||||||||||||||||| | ||||| |||||||| ||||||||| ||| |||| |||| | |||| ||||||||||  | |||  | | |    
T  35219391 catcaatcatcttgaacacaagataagttgcatacagagtatttggagacaaggtaagggtgtttatcttgccacaaatttcaagccgacacatgttaag 35219490  T
Q  191 aagctcagcaacttcagggaacctgtccaaa 221  Q
    ||||||| |||||||||||||||||||||||    
T  35219491 aagctcaacaacttcagggaacctgtccaaa 35219521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 35216208 - 35216308
Alignment:
Q  48 acaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaa 147  Q
    ||||||||||||||||||| ||||  |||||  |||||||  |||||||||| ||| ||||||||||||| | |||||||||||||| ||||||||||||    
T  35216208 acaccaactgataactccagaggacagttctgaaatccttcggcatcaatcatcttaaacacaagataagttgcatactgagtatttggagacaaggcaa 35216307  T
Q  148 g 148  Q
    |    
T  35216308 g 35216308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 35270682 - 35270866
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcg 136  Q
    ||||||||| ||||||||||||||| ||| ||||| ||||||  |||||   ||||| |||||  |||||||||| ||||||| |||| ||||||||| |    
T  35270682 ggccaccttcgacaccaactgataaatccgcaggacggttctgaaatcccgaagcattaatcattttgaacacaacataagctgcatattgagtatttgg 35270781  T
Q  137 agacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 221  Q
     |||| | | |  |||| ||||   ||| ||||||||||| || ||||||||  ||||| ||| |||||||||||||||||||||    
T  35270782 ggacaggacgatggtgtttatcacaccatgaatttcaagccaacacacatcaacaagcttagcgacttcagggaacctgtccaaa 35270866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 37 - 215
Target Start/End: Original strand, 35147595 - 35147773
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcg 136  Q
    ||||||||| |||||||||||||||||| | ||||  |||||  |||||||  || ||||||| ||||||||||||||||||  ||||||| |||||| |    
T  35147595 ggccaccttcgacaccaactgataactctataggacagttctgaaatccttcggcttcaatcatcttgaacacaagataagccgcatactgggtatttgg 35147694  T
Q  137 agacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctg 215  Q
     ||||||  ||| |||| |||| | |||| ||| |||||| |  |||| | | |||| | |||||||||||||||||||    
T  35147695 ggacaagctaagggtgtttatcgtcccactaatatcaagccaccacactttaagaagttgagcaacttcagggaacctg 35147773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 19266457 - 19266670
Alignment:
Q  1 catatggatctaaacagccaacactagtaatattaaggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaa 100  Q
    ||||||| |||||||||||||   ||||||||| | ||||||| ||||||||||||||||||  |||  ||| |||||  ||| |||||||| ||||||     
T  19266457 catatggttctaaacagccaatgttagtaatataatggccaccattgacaccaactgataacatcacgagatagttcttaaattcttgagcagcaatcat 19266556  T
Q  101 cttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagca 200  Q
     |||||||||||| ||||| ||||| | |||||| |  ||||| | || |||| |||||| | || |||||  ||| || |||||| | ||| |||| ||    
T  19266557 attgaacacaagaaaagctgcatacagtgtattttggaacaagccgagggtgtttatcctccgacaaatttagagcgaatacacatgatgaatctcaaca 19266656  T
Q  201 acttcagggaacct 214  Q
    |||| |||||||||    
T  19266657 actttagggaacct 19266670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 35263257 - 35263441
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcg 136  Q
    ||||||||| ||||| ||||||||| ||||||||| ||||||  |||||   |||||||||||  |||||||||| ||||||| |||| ||||||| | |    
T  35263257 ggccaccttcgacacaaactgataagtccacaggacggttctgaaatccccaagcatcaatcattttgaacacaacataagctgcatattgagtatatgg 35263356  T
Q  137 agacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 221  Q
     ||||   |||  |||| ||||   ||||||||||||||| || | || |||  ||||| |||||||||||||||||||| ||||    
T  35263357 ggacagaacaatggtgtttatcacaccacgaatttcaagccaacatacgtcaacaagcttagcaacttcagggaacctgttcaaa 35263441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 8639228 - 8639367
Alignment:
Q  91 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 190  Q
    ||||||||| ||||||||||||||||| | ||||   ||||||  | ||||||||| | |||| |||| |||||||||||| ||||  | |||||| | |    
T  8639228 catcaatcatcttgaacacaagataagttgcatatgtagtattcggggacaaggcacgggtgtttatctttccacgaattttaagccgacacacattaag 8639327  T
Q  191 aagctcagcaacttcagggaacctgtccaaattttttgca 230  Q
    || |||| ||||||||||||||||||||||| ||| ||||    
T  8639328 aatctcaacaacttcagggaacctgtccaaaatttgtgca 8639367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 35200235 - 35200362
Alignment:
Q  94 caatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaag 193  Q
    |||||| ||||||||||||||||||| |||||||||||||| | ||||| |||||  ||| |||| | |||| ||| | |||| || | ||| || ||||    
T  35200235 caatcatcttgaacacaagataagctgcatactgagtatttggggacaatgcaagcatgtttatcatcccactaatatgaagccaacaaacaacaagaag 35200334  T
Q  194 ctcagcaacttcagggaacctgtccaaa 221  Q
    |||||| |||||||||||||| ||||||    
T  35200335 ctcagcgacttcagggaacctatccaaa 35200362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 90 - 220
Target Start/End: Original strand, 35205244 - 35205373
Alignment:
Q  90 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 189  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| |||||| |||  ||| | ||||||||||| ||| |  |||||| ||    
T  35205244 gcatcaatcatcttgaacacaagataagctgcatattgagtatttggagacaatgcaagattgttaatcatcccacgaatttcgagccaccacacatgac 35205343  T
Q  190 gaagctcagcaacttcagggaacctgtccaa 220  Q
    |||| | |||||| || |||| |||||||||    
T  35205344 gaagataagcaac-tcggggagcctgtccaa 35205373  T

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Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 35476641 - 35476767
Alignment:
Q  94 caatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaag 193  Q
    |||||| ||||||||||||||||||  |||||||||||||| | |||||||||   |||| |||| ||||| ||||||||||| ||  ||||| | ||||    
T  35476641 caatcatcttgaacacaagataagccgcatactgagtatttggggacaaggcattggtgtttatctttccatgaatttcaagccaacgcacatgaagaag 35476740  T
Q  194 ctcagcaacttcagggaacctgtccaa 220  Q
    || ||||||||  |||||||| |||||    
T  35476741 cttagcaactttggggaacctatccaa 35476767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 35212230 - 35212345
Alignment:
Q  34 taaggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatt 133  Q
    |||||||||||| ||  |||||  |||| ||||||||| |||||   ||||| || |||||||||| ||||||||||||||||||  ||||  |||||||    
T  35212230 taaggccaccttcgatgccaacgaataagtccacaggaaggttcctgaatccatgggcatcaatcatcttgaacacaagataagccgcatagcgagtatt 35212329  T
Q  134 tcgagacaaggcaaga 149  Q
    | ||||||||||||||    
T  35212330 tggagacaaggcaaga 35212345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 34309696 - 34309814
Alignment:
Q  90 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 189  Q
    |||| ||||| ||||||||| ||||||||  |||||||||||||| | ||||||| ||||||||  ||| | ||||||||||||||| |  |||||  ||    
T  34309696 gcattaatcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacgaatttcaagcgagtacacaagac 34309795  T
Q  190 gaagctcagcaacttcagg 208  Q
     ||||| ||||||||||||    
T  34309796 aaagcttagcaacttcagg 34309814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 35208373 - 35208559
Alignment:
Q  37 ggccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtattt-c 135  Q
    ||||||||  |||||||||||||||||||| ||||  |||||  |||||||  |||||||||| |||||||||||| ||| || ||| ||  ||||||      
T  35208373 ggccacctccgacaccaactgataactccataggacagttctgaaatccttcggcatcaatcatcttgaacacaagttaaactgcatccttggtatttgg 35208472  T
Q  136 gagacaaggcaagagtgtctatccttccac-gaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 221  Q
    | |||||||||||  | | |||| | | || |||| |||||| |  |||| | | ||||||||||||||||||||||||||||||||    
T  35208473 gggacaaggcaaggatatttatcatcctacggaatatcaagccaccacactttaagaagctcagcaacttcagggaacctgtccaaa 35208559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 35248588 - 35248662
Alignment:
Q  91 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccac 165  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| | |||||| |||  |||| |||||| ||||    
T  35248588 catcaatcaccttgaacacaagataagctgcatactgagtatttggggacaagtcaatggtgtttatcctaccac 35248662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 35474177 - 35474347
Alignment:
Q  49 caccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaag 148  Q
    ||||||| |||||||||||| ||| |||||| ||||     |||| ||||| ||||||||||||||||| | ||||  | |||| | | |||||||||||    
T  35474177 caccaacagataactccacaagatagttctcaaatcgagaggcattaatcatcttgaacacaagataagttccatatagtgtatgtggggacaaggcaag 35474276  T
Q  149 agtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 221  Q
     |||| |||| | |||||||| ||||||  || ||||| | |||||||| ||| ||||||| |||||||||||    
T  35474277 ggtgtttatcttcccacgaatctcaagc-caaccacattaagaagctcaacaaattcaggg-acctgtccaaa 35474347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 35252398 - 35252444
Alignment:
Q  101 cttgaacacaagataagctacatactgagtatttcgagacaaggcaa 147  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  35252398 cttgaacacaagatacgctacatactgagtatttggggacaaggcaa 35252444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 19267591 - 19267480
Alignment:
Q  105 aacacaagataagcta--catactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaac 202  Q
    |||||||||||||||   ||||| ||||| || | |||||||  || |||| ||||||||||||||||||| |  || |||||| | ||| |||| |||     
T  19267591 aacacaagataagctctgcatacagagtaatttgggacaaggtgagggtgtttatccttccacgaatttcatgtgaatacacatgaagaatctcaacaat 19267492  T
Q  203 ttcagggaacct 214  Q
    ||||||||||||    
T  19267491 ttcagggaacct 19267480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 899552 - 899427
Alignment:
Q  91 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 190  Q
    ||||||||| ||||||||||||||||||  |||||  ||||||| | ||||||| || |||||  ||  ||||||||||||||||| | ||||||  ||     
T  899552 catcaatcatcttgaacacaagataagccgcataccaagtattttgggacaaggaaaaagtgttaattattccacgaatttcaagcgagaacacaagaca 899453  T
Q  191 aagctcagcaacttcagggaacctgt 216  Q
    ||||| | | |||||||| |||||||    
T  899452 aagcttaacgacttcaggaaacctgt 899427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 19246845 - 19246719
Alignment:
Q  90 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 189  Q
    |||||||| | |||||| || ||||||||| |||||||||||||| | ||||||| |||||| |  ||  | |||||||||||| || | ||||||  ||    
T  19246845 gcatcaattatcttgaagacgagataagctgcatactgagtatttggggacaaggaaagagtcttaataataccacgaatttcatgcgagaacacaagac 19246746  T
Q  190 gaagctcagcaacttcagggaacctgt 216  Q
      |||| ||||||||| ||||||||||    
T  19246745 tgagcttagcaacttccgggaacctgt 19246719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 23332100 - 23332211
Alignment:
Q  105 aacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaactt 204  Q
    ||||| || |||||| |||||||||||||| | ||||| | ||||||||  ||  | |||| ||||||| || | |||| |  |||||||| ||||||||    
T  23332100 aacacgaggtaagctgcatactgagtatttggggacaatgaaagagtgttaataatcccacaaatttcatgcgagaacaaaagacgaagcttagcaactt 23332199  T
Q  205 cagggaacctgt 216  Q
    ||||||||||||    
T  23332200 cagggaacctgt 23332211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 53924160 - 53924083
Alignment:
Q  101 cttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaa 178  Q
    ||||||||||||||||||  ||||| |||||||| | |||||| |||| |||| |||| ||||  ||| |||||||||    
T  53924160 cttgaacacaagataagccgcataccgagtatttggggacaagacaagggtgtttatcattccttgaaattcaagcaa 53924083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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