View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_21 (Length: 250)
Name: NF18665_low_21
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 40188617 - 40188400
Alignment:
| Q |
23 |
tccatttcataaagagatccatcagatttgagaggcataatgggaagtaatgaatacaagccagcattttcatgttcaagtccataagagtaacaaaagt |
122 |
Q |
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| T |
40188617 |
tccatttcaaaaagagatccatcagatttgagaggcataatgggaagtaatgaatacaagccagcattttcatgttcaagtccataagagtaacaaaagt |
40188518 |
T |
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| Q |
123 |
tactaagaggtgaagaatggtaaaagcttgcttgaagtggaactacttcagaagcagtagcagtagcagaaggtagtgaatgatgatgagtgtgagaaga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40188517 |
tactaagaggtgaagaatggtaaaagcttgcttgaagtggaactacttcagaagcagtagcagtagcagaaggtagtgaatgatgatgagtgtgtgaaga |
40188418 |
T |
|
| Q |
223 |
aacaccaatattattcat |
240 |
Q |
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|||||||||||||||||| |
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| T |
40188417 |
aacaccaatattattcat |
40188400 |
T |
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