View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_23 (Length: 241)
Name: NF18665_low_23
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 50439456 - 50439680
Alignment:
| Q |
1 |
ggattcccatttgatatggatggtggtgctagaactctccattttcactttgttggcaatatggtcaattagacctccacatagaatggaatattgatga |
100 |
Q |
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| T |
50439456 |
ggattcccatttgatatggatggtggtgctagaactctccattttcactttgttggcaatatggataagtagacccccacatagaatggaatattgatga |
50439555 |
T |
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| Q |
101 |
aataaaacagttcattatgatccttctacaaagctaaaaaatttccaatatcatcgttaccaaggttccattcaagccaaggcatgaaacctagactaaa |
200 |
Q |
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| T |
50439556 |
aataaaacagttcattatgatccttctacaaagctaaaaaatttccaatatcatcgtcaccaaggttccattcaagccaaggcatgaaacctagactaaa |
50439655 |
T |
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| Q |
201 |
gaatttcgcccaataatatggtttg |
225 |
Q |
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| T |
50439656 |
gaatttcgcccaataatatggtttg |
50439680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 39559320 - 39559396
Alignment:
| Q |
141 |
atttccaatatcatcgttaccaaggttccattcaagccaaggcatgaaacctagactaaagaatttcgcccaataat |
217 |
Q |
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|||||||||||| ||||| | |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| |
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| T |
39559320 |
atttccaatatcttcgttgctaaggttccattcaagccaaggcatgagacctatgctaaagaatttagctcaataat |
39559396 |
T |
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