View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_24 (Length: 241)
Name: NF18665_low_24
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 28 - 234
Target Start/End: Complemental strand, 8411241 - 8411033
Alignment:
| Q |
28 |
aaacaatccaaacatgttcctaaaaggtatg--gtgaaagattgtagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaaaa |
125 |
Q |
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| T |
8411241 |
aaacaatccaaacatgtccctaaaaggtatgtggtgaaagattgaagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaaaa |
8411142 |
T |
|
| Q |
126 |
aggttgaaactagtgtactggcaggatatgttattaaccttgagaaagagttgtctactagcatttctgttggagcagctcttgtgcaatcaacacagtt |
225 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8411141 |
aggtagaaactagtgtactggtaggagatgttattaaccttgagaaagagttatctactagcatttatgttggagcagctcttgtgcaatcaacacagtt |
8411042 |
T |
|
| Q |
226 |
tgatgatgt |
234 |
Q |
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||| ||||| |
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| T |
8411041 |
tgaagatgt |
8411033 |
T |
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Back To:
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 20424693 - 20424903
Alignment:
| Q |
26 |
caaaacaatccaaacatgttcctaaaaggtatg--gtgaaagattgtagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaa |
123 |
Q |
| |
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||||||||| |||||||| ||||||| ||||| |||||||| ||| |||||| ||| || |||| || ||||||||| | |||||| |||||| || |
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| T |
20424693 |
caaaacaattcaaacatgaccctaaaaagtatgtagtgaaagaatgtcgtaaaggtgtggcagatgaagatcctattattagtgatataataaggtccaa |
20424792 |
T |
|
| Q |
124 |
aaaggttgaaactagtgtactggcaggatatgttattaaccttgagaaagagttgtctactagcatttctgttggagcagctcttgtgcaatcaacacag |
223 |
Q |
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|||| |||||||||| |||| | || || |||||||| ||||| ||||||||||| ||||||| ||||||||| |||||| | |||||||||||||| |
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| T |
20424793 |
ggaggtagaaactagtgcactgataagaaatattattaactttgaggaagagttgtctgctagcatctctgttggaacagctcgtttgcaatcaacacag |
20424892 |
T |
|
| Q |
224 |
tttgatgatgt |
234 |
Q |
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|||| ||||| |
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| T |
20424893 |
attgaagatgt |
20424903 |
T |
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