View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18665_low_25 (Length: 240)

Name: NF18665_low_25
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18665_low_25
NF18665_low_25
[»] chr8 (1 HSPs)
chr8 (1-225)||(11486801-11487025)
[»] chr3 (19 HSPs)
chr3 (40-225)||(10502352-10502534)
chr3 (40-174)||(10679255-10679389)
chr3 (40-175)||(10530463-10530598)
chr3 (38-175)||(10582426-10582563)
chr3 (40-125)||(11771100-11771185)
chr3 (38-180)||(10090601-10090743)
chr3 (38-180)||(10197484-10197626)
chr3 (38-180)||(10361917-10362059)
chr3 (38-123)||(10665394-10665479)
chr3 (38-125)||(10432160-10432247)
chr3 (38-175)||(10373961-10374098)
chr3 (40-125)||(11780100-11780185)
chr3 (38-128)||(9840724-9840814)
chr3 (38-128)||(9851602-9851692)
chr3 (40-175)||(10079226-10079361)
chr3 (40-175)||(10186196-10186331)
chr3 (38-128)||(10519348-10519438)
chr3 (38-175)||(10033816-10033953)
chr3 (38-175)||(10262514-10262651)
[»] chr4 (1 HSPs)
chr4 (38-159)||(17851042-17851163)
[»] chr2 (1 HSPs)
chr2 (40-125)||(26908754-26908839)
[»] scaffold0083 (1 HSPs)
scaffold0083 (38-128)||(55718-55808)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11487025 - 11486801
Alignment:
Q  1 aactccagagttctaagacgaggaaaagnnnnnnntttgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaaggg 100  Q
    ||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11487025 aactcaagagttctaagacgaggaaaagaaaaaaatttgccttcaaaaggaagccattccttccaattttgcatgttgacaaatgttatacattcaaggg 11486926  T
Q  101 atgaaaatggttggaaggaagaattagaagcttttccttccttgacacaatagaactcttggccaattgtctccagcatgaacatattcgttatactcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  11486925 atgaaaatggttggaaggaagaattagaagcttttccttccttgacacaatagaactcttggccaattgtctccaacatcaacatattccttatactcag 11486826  T
Q  201 tttcttgagagatggtagttgccct 225  Q
    |||||||||||||||||||||||||    
T  11486825 tttcttgagagatggtagttgccct 11486801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 10502534 - 10502352
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcctt 139  Q
    |||||||| | ||||||||||||||||||| ||||||||  |||||||||||| |||||||| | |||||||||||||||||||| |||| |||   |||    
T  10502534 ccttcaaaggaaagccattccttccaatttggcatgttgaaaaatgttatacactcaagggagggaaatggttggaaggaagaatcagaacctt---ctt 10502438  T
Q  140 ccttgacacaatagaactcttggccaattgtctccagcatgaacatattcgttatactcagtttcttgagagatggtagttgccct 225  Q
    |   |||||||||||||||| |||||||| ||||||  || ||||||| |  |||||| || |  |||||||| ||||||||||||    
T  10502437 ctacgacacaatagaactctgggccaattttctccaatattaacatataccctatacttaggtctttgagagaaggtagttgccct 10502352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 10679389 - 10679255
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcctt 139  Q
    ||||||||||| |||||||| ||||||||| ||||| |   |||| ||||||| |||||||| | ||||||||||||||||||||| ||| ||| |||||    
T  10679389 ccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacactcaagggacggaaatggttggaaggaagaatttgaaccttctcctt 10679290  T
Q  140 ccttgacacaatagaactcttggccaattgtctcc 174  Q
    | | ||||||||||||||||  ||||||| |||||    
T  10679289 cttggacacaatagaactctgagccaattctctcc 10679255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 10530598 - 10530463
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcctt 139  Q
    ||||||||||| |||||||| ||||||||| ||||| |   |||| ||||||  |||||||| | ||||||||||||||||||||| ||| ||| |||||    
T  10530598 ccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacgctcaagggacggaaatggttggaaggaagaatttgaaccttctcctt 10530499  T
Q  140 ccttgacacaatagaactcttggccaattgtctcca 175  Q
    | | ||||||||||||||||  ||||||| ||||||    
T  10530498 cttggacacaatagaactctgagccaattctctcca 10530463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 10582563 - 10582426
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    |||||||||| ||||||||||  ||||||||| | || ||| | ||| ||||| | |||||||||| ||||||||||||||||||||||||| ||| | |    
T  10582563 tgccttcaaagggaagccatttattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaattagaaccttcttc 10582464  T
Q  138 ttccttgacacaatagaactcttggccaattgtctcca 175  Q
       || |||| ||||||||||  |||||||||||||||    
T  10582463 aatctggacataatagaactccaggccaattgtctcca 10582426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 11771185 - 11771100
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaatt 125  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||| |||||   || ||||||| |||||||||||||||||||||    
T  11771185 ccttcaaaaggaagccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttggaaggaagaatt 11771100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 10090743 - 10090601
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    |||||||| | ||||||||||| ||||||||| |||||||| | ||| ||||||  ||||||| || |||||| ||||||||||||  |||| ||| | |    
T  10090743 tgccttcatagggaagccattcattccaatttggcatgttgtcgaattttatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttc 10090644  T
Q  138 ttccttgacacaatagaactcttggccaattgtctccagcatg 180  Q
    | ||| |||| ||||||||||  | ||||||||||||| ||||    
T  10090643 tccctggacataatagaactccggaccaattgtctccaacatg 10090601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 10197626 - 10197484
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    |||||||| | ||||||||||| ||||||||| |||||||| | ||| ||||||  ||||||| || |||||| ||||||||||||  |||| ||| | |    
T  10197626 tgccttcatagggaagccattcattccaatttggcatgttgtcgaattttatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttc 10197527  T
Q  138 ttccttgacacaatagaactcttggccaattgtctccagcatg 180  Q
    | ||| |||| ||||||||||  | ||||||||||||| ||||    
T  10197526 tccctggacataatagaactccggaccaattgtctccaacatg 10197484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 10361917 - 10362059
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    |||||||||| |||| |||||| ||||||||| |||||||| | ||  |||| |  |||||||||| ||||||||||||||||||||||||| | | | |    
T  10361917 tgccttcaaagggaatccattcattccaatttggcatgttgtcgaaatttatgcgctcaagggatggaaatggttggaaggaagaattagaaccatcttc 10362016  T
Q  138 ttccttgacacaatagaactcttggccaattgtctccagcatg 180  Q
       || |||| ||||||||||  ||||||||||||||| ||||    
T  10362017 aatctggacataatagaactccaggccaattgtctccaacatg 10362059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 10665479 - 10665394
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaa 123  Q
    |||||||||| |||| |||||| ||||||||| | |||||| | ||| ||||||| |||||||||| |||||||||||||||||||    
T  10665479 tgccttcaaagggaatccattcattccaatttggtatgttgtcgaattttatacactcaagggatggaaatggttggaaggaagaa 10665394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 10432160 - 10432247
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaatt 125  Q
    |||||||||| || |||||||| ||||||||| |||||||| | ||| ||||||  |||||||||| ||||||| |||||||||||||    
T  10432160 tgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtaggaaggaagaatt 10432247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 10373961 - 10374098
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    |||||||||| |||| |||||| ||||||||  |||||||| | ||  ||||||  ||||||||||  |||||||||||||||||||||||  ||| | |    
T  10373961 tgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttc 10374060  T
Q  138 ttccttgacacaatagaactcttggccaattgtctcca 175  Q
       |||| || ||||||||||  |||||||||||||||    
T  10374061 aatcttggcataatagaactccgggccaattgtctcca 10374098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 11780100 - 11780185
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaatt 125  Q
    |||||||| |||| |||||| ||||||||| |||||||| ||||| |||||   || ||||||| |||||||||||||||||||||    
T  11780100 ccttcaaagggaaaccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttggaaggaagaatt 11780185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 9840814 - 9840724
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattaga 128  Q
    |||||||||| |||| |||||| ||||||||  |||||||| | ||  ||||||  ||||||||||  |||||||||||||||||||||||    
T  9840814 tgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattaga 9840724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 9851692 - 9851602
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattaga 128  Q
    |||||||||| |||| |||||| ||||||||  |||||||| | ||  ||||||  ||||||||||  |||||||||||||||||||||||    
T  9851692 tgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattaga 9851602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 10079361 - 10079226
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcctt 139  Q
    |||||||| ||||||||||  ||||||||| ||||||||  |||| |||| |  |||||||||| ||||||||||||| |||| | |||  ||| | |      
T  10079361 ccttcaaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaagaaagattcagagccttcttcaa 10079262  T
Q  140 ccttgacacaatagaactcttggccaattgtctcca 175  Q
     || |||| ||||||||||  |||||||||||||||    
T  10079261 tctggacataatagaactccgggccaattgtctcca 10079226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 10186331 - 10186196
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcctt 139  Q
    |||||||| ||||||||||  ||||||||| ||||||||  |||| |||| |  |||||||||| ||||||||||||| |||| | |||  ||| | |      
T  10186331 ccttcaaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaagaaagattcagagccttcttcaa 10186232  T
Q  140 ccttgacacaatagaactcttggccaattgtctcca 175  Q
     || |||| ||||||||||  |||||||||||||||    
T  10186231 tctggacataatagaactccgggccaattgtctcca 10186196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 10519438 - 10519348
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattaga 128  Q
    ||||||| || |||| |||||| ||||||||  |||||||| | ||  ||||||  ||||||||||  |||||||||||||||||||||||    
T  10519438 tgccttcgaagggaatccattcattccaattgagcatgttgtcgaacattatacgctcaagggatgggaatggttggaaggaagaattaga 10519348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 10033953 - 10033816
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    |||||||||| |||| |||||| ||||||||   ||||||| | ||  ||||||  |||||||||   |||||||||||||||||||||||  ||||| |    
T  10033953 tgccttcaaagggaatccattcattccaattgaccatgttgtcgaactttatacgctcaagggatcggaatggttggaaggaagaattagatcctttttc 10033854  T
Q  138 ttccttgacacaatagaactcttggccaattgtctcca 175  Q
       || | || ||||||||||  |||||||||||||||    
T  10033853 aatctgggcataatagaactccgggccaattgtctcca 10033816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 10262651 - 10262514
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    |||||||| | ||||||||||| ||||||||| ||| | ||   ||| ||||||  |||||||||  |||||||||||||||||||  |||| ||| | |    
T  10262651 tgccttcatagggaagccattcattccaatttggcaagctgttgaattttatacgctcaagggattgaaatggttggaaggaagaacaagaaccttcttc 10262552  T
Q  138 ttccttgacacaatagaactcttggccaattgtctcca 175  Q
    | | | |||| ||||||||||  | |||||||||||||    
T  10262551 tccttggacataatagaactccggaccaattgtctcca 10262514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 17851042 - 17851163
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttcc 137  Q
    ||||| |||| ||||||||||||||||||||| ||||||||  |||  ||| ||| |||||||| | ||||||||| ||||||||||| ||| ||| |||    
T  17851042 tgcctacaaagggaagccattccttccaatttggcatgttgcgaaacattaaacactcaagggacggaaatggttgaaaggaagaattggaaccttctcc 17851141  T
Q  138 ttccttgacacaatagaactct 159  Q
    | ||| ||||  ||||||||||    
T  17851142 tgcctggacatgatagaactct 17851163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 26908839 - 26908754
Alignment:
Q  40 ccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaatt 125  Q
    |||||||| ||||||||||  ||||||||| ||||||||  |||| ||||||  |||||||||  |||||||||||||||| ||||    
T  26908839 ccttcaaagggaagccattgattccaatttggcatgttgttaaattttatacgctcaagggattgaaatggttggaaggaaaaatt 26908754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 55718 - 55808
Alignment:
Q  38 tgccttcaaaaggaagccattccttccaattttgcatgttggcaaatgttatacattcaagggatgaaaatggttggaaggaagaattaga 128  Q
    |||||||||| |||| |||||| ||||||||   ||||||| | ||  ||||| | |||||||||   |||||||||||||||||||||||    
T  55718 tgccttcaaagggaatccattcattccaattgaacatgttgtcgaactttataaactcaagggataggaatggttggaaggaagaattaga 55808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University