View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_3 (Length: 541)
Name: NF18665_low_3
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 241 - 528
Target Start/End: Original strand, 48384270 - 48384571
Alignment:
| Q |
241 |
gacaaggcaatgtcattccaattccattgaaaaaagttgcttattgagaattg--------------cttagaggagaacagaacaggtcacagaaataa |
326 |
Q |
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| T |
48384270 |
gacaaggcaatgtcattccaattccattgaaaaaagttgcttattgagaattgagaagtgacgactacttagaggagaacagaacaggtcacagaaataa |
48384369 |
T |
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| Q |
327 |
ctataccttcaatttcattcaacttggcttatcttagcttatttgtggttttagtttcactttcaaatttcctaaaacataaacttatgcccattcccaa |
426 |
Q |
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| T |
48384370 |
ctataccttcaatttcattcaacttggcttatcttagcttttttgtggttttagtttcactttcaaatttcctaaaacataaacttatgcccattcccaa |
48384469 |
T |
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| Q |
427 |
tgcacatgtccattagtgacctagctagctaacagataaaaacgaatccttccaacgacgtcgtttagtgaatgagtgcttttggatacaattatttggt |
526 |
Q |
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| T |
48384470 |
tgcacatgtccattagtgacctagctagctaacagataaaaacgaatccttccaacgacgtcgtttagtgaatgagtgcttttggatacaattatttggt |
48384569 |
T |
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| Q |
527 |
tc |
528 |
Q |
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| T |
48384570 |
tc |
48384571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 48384064 - 48384254
Alignment:
| Q |
31 |
aacatttaattgcataactagtaaactttaaattaaaacgatgaaatcggtttttgaccttatcaaacagaaaaagcaagaaaa----gcgtaccaatac |
126 |
Q |
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| T |
48384064 |
aacatttaattgcataactagtaaacttaaaattaaaacgatgaaatcggtttttgaccgtatcaaacagaaaaagcaagaaaacaaggcgtaccaatac |
48384163 |
T |
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| Q |
127 |
aa----tattattattatgctgctg--ggttgtattgtatgtatgtcaatttggatggattcatcattcacttaagattaaaaaagtagtaagtact |
217 |
Q |
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| T |
48384164 |
aaatattattattattatgctgctgcctgctgggttgtatgtatg------tggatggattcatgattcacttaagattaaaaaagtagaaagtact |
48384254 |
T |
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