View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18665_low_4 (Length: 522)
Name: NF18665_low_4
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 3091255 - 3091567
Alignment:
| Q |
10 |
catcacatttaaaataaaaatcaattaattttatagagtttgaagtagtatccgatagtcatgattattttgagcccgagtatatgtcttatttaagtaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3091255 |
catcccatttaaaataaaaatcaattaattttatagagtttgaagtagtatccgatagtcatgattattttgagtccgagtatatgtcttatttaagtaa |
3091354 |
T |
|
| Q |
110 |
cgtaagtgttacaaccaaaatagt---------ttttgttgatgctaataattcaaatcctaatattattcattttttaaaataagtcctaatccaattt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3091355 |
tgtaagtgttacaaccaaaatagtgcatttagtttttgttgatgctaataattcaaatcataatattattcattttttaaaataagtcctaatccaattt |
3091454 |
T |
|
| Q |
201 |
tttaatgtatggataaggtaatttagataataaatctacctcaaagacatcactgttgaagatggttacacatctaaatcacaaagatataaatcgagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3091455 |
tttaatgtatggataaggtaatttagataataaatctacctcaaagacatcagtgttgaagatggttacacatctaaatcacaaagatataaatcgagaa |
3091554 |
T |
|
| Q |
301 |
aacacacaaaatg |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3091555 |
aacacacaaaatg |
3091567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 357 - 513
Target Start/End: Original strand, 3091565 - 3091718
Alignment:
| Q |
357 |
atgatgatattggtttcatgcttgaaggaataatttgaaatgaaatcataacacaagatgatggaagtatggtcaaatggtcaacgggaatcaacaaatg |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3091565 |
atgatgatattggtttcatgcttgaaggaataattttaaatgaaatcataacacaagatgc---aagtatggtcaaatggtcaacgggaatcaacaaatg |
3091661 |
T |
|
| Q |
457 |
caggcagacacttggtggtagggtgtctgtaatttcagacaaaattgtttttcttct |
513 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
3091662 |
caggcagacacgtggtggtagggggtctgtaatatccgacaaaattgtttttcttct |
3091718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University