View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_5 (Length: 463)
Name: NF18665_low_5
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 300
Target Start/End: Original strand, 45512262 - 45512530
Alignment:
| Q |
32 |
caatagaaacacagagagaaagcatgggaagatattacaaacgtgtagtgcttttggtgttgattgaaattgcacaaatatgcttgtgtgtaaattcaaa |
131 |
Q |
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| T |
45512262 |
caatagaaacagagatagaaaacatgggaagatattacaaatgtgtagtacttttggtgttgattgaaattgcacaaatatgcttgtgtgtaaattcaaa |
45512361 |
T |
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| Q |
132 |
catcccctgcgttgaaaaagagaggcaagcccttctcgatttcaaagcatccattgcaaaagattcaccaaacaagctttcatcatggaaaggcactcaa |
231 |
Q |
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| T |
45512362 |
catcccctgtattgaaaaagagaggcaagcccttctcaatttcaaagcatccattgcacatgattcaccaaacaagctttcatcatggaaaggcactcac |
45512461 |
T |
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| Q |
232 |
tgttgtcaatgggaaggcattggttgtgacaatgttactggacatgttaccaagcttgatctcatgaat |
300 |
Q |
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| T |
45512462 |
tgttgccaatgggaaggcattggttgtgacaatgttactagacatgttgtcaaacttgatctcatgaat |
45512530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 329 - 449
Target Start/End: Original strand, 45512625 - 45512746
Alignment:
| Q |
329 |
ttgctccaaatgtcagttcatctttgttgcaattggaacacttgac-tatttggacttgtctggaagtgatttccgtgagagaccaattcccatgttcat |
427 |
Q |
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| T |
45512625 |
ttgctccaaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctggaaataatttcagtgggagtccaattcctatgttctt |
45512724 |
T |
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| Q |
428 |
cggttccatgggaagacttgag |
449 |
Q |
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| T |
45512725 |
gggttccatgggacgccttgag |
45512746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 22848917 - 22848813
Alignment:
| Q |
346 |
tcatctttgttgcaattggaacacttgact-atttggacttgtctggaagtgatttccgtgagagaccaattcccatgttcatcggttccatgggaagac |
444 |
Q |
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|||||||||||||| |||||| |||||||| ||||||||||| |||||| ||||||| | ||| |||||||| |||||| | |||||||||||| | | |
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| T |
22848917 |
tcatctttgttgcacttggaatacttgacttatttggacttgactggaaatgatttcaatttgagtccaattcctatgttcgtaggttccatgggacgtc |
22848818 |
T |
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| Q |
445 |
ttgag |
449 |
Q |
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||||| |
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| T |
22848817 |
ttgag |
22848813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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